Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G000650 Manihot esculenta HOM05D000727 ORTHO05D000541 1.4e-54 216.1 112 100.0
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 1.4e-22 109.8 83 68.7
CANSAT78G1765 Cannabis sativa HOM05D000727 ORTHO05D000541 2.0e-21 105.9 82 69.5
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 2.0e-21 105.9 103 60.2
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 4.5e-21 104.8 103 58.3
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 6.5e-20 100.9 120 48.3
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 3.2e-19 98.6 120 46.7
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 9.4e-19 97.1 104 52.9
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 2.1e-18 95.9 99 51.5
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 2.1e-18 95.9 102 51.0
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 8.0e-18 94.0 102 52.0
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 1.4e-17 93.2 105 54.3
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.8e-17 92.8 103 52.4
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 1.8e-17 92.8 79 62.0
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 4.0e-17 91.7 70 67.1
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 6.7e-17 90.9 79 62.0
FvH4_4g37280 Fragaria vesca HOM05D000727 ORTHO05D000541 8.8e-17 90.5 107 51.4
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 8.8e-17 90.5 100 51.0
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 1.2e-16 90.1 103 51.5
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 1.2e-16 90.1 106 53.8
RcHm_v2.0_Chr4g0447101 Rosa chinensis HOM05D000727 ORTHO05D000541 1.5e-16 89.7 106 51.9
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 2.0e-16 89.4 109 48.6
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 2.0e-16 89.4 109 48.6
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 2.6e-16 89.0 70 65.7
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 4.4e-16 88.2 80 63.8
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 5.7e-16 87.8 79 59.5
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 7.5e-16 87.4 103 50.5
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.7e-15 86.3 103 49.5
Manes.04G161800 Manihot esculenta HOM05D000727 ORTHO05D000541 2.2e-15 85.9 70 68.6
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 2.2e-15 85.9 97 52.6
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 2.2e-15 85.9 97 52.6
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 3.7e-15 85.1 82 61.0
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 4.8e-15 84.7 101 50.5
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 6.3e-15 84.3 108 50.0
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 6.3e-15 84.3 109 49.5
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 6.3e-15 84.3 110 49.1
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 6.3e-15 84.3 109 49.5
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 6.3e-15 84.3 109 49.5
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 6.3e-15 84.3 110 49.1
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 8.2e-15 84.0 103 50.5
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 1.1e-14 83.6 106 50.0
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 1.4e-14 83.2 67 61.2
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 3.1e-14 82.0 106 45.3
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 3.1e-14 82.0 65 60.0
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 5.3e-14 81.3 81 54.3
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 5.3e-14 81.3 104 47.1
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 5.3e-14 81.3 104 47.1
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 9.1e-14 80.5 104 50.0
CiPaw.16G001200 Carya illinoinensis HOM05D000727 ORTHO05D000541 1.6e-13 79.7 70 61.4
arahy.Tifrunner.gnm1.ann1.BLWT23 Arachis hypogaea HOM05D000727 ORTHO05D000541 2.7e-13 79.0 53 67.9
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 2.7e-13 79.0 82 57.3
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 2.7e-13 79.0 82 53.7
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 3.5e-13 78.6 103 45.6
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 5.9e-13 77.8 102 49.0
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 5.9e-13 77.8 104 45.2
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 7.7e-13 77.4 79 55.7
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 1.0e-12 77.0 58 67.2
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 1.3e-12 76.6 65 60.0
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 1.3e-12 76.6 72 55.6
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 1.3e-12 76.6 102 46.1
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.3e-12 76.6 102 46.1
arahy.Tifrunner.gnm1.ann1.Z3R5C5 Arachis hypogaea HOM05D000727 ORTHO05D000541 1.7e-12 76.3 105 44.8
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 1.7e-12 76.3 72 55.6
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.7e-12 76.3 57 61.4
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.7e-12 76.3 122 43.4
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 1.7e-12 76.3 53 64.2
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 2.2e-12 75.9 116 41.4
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 2.9e-12 75.5 60 65.0
Ca_11274_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 2.9e-12 75.5 82 56.1
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 2.9e-12 75.5 53 64.2
FvH4_5g24080 Fragaria vesca HOM05D000727 ORTHO05D000541 3.8e-12 75.1 53 66.0
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 5.0e-12 74.7 70 55.7
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 8.5e-12 73.9 104 45.2
CDE08G0404 Ceratophyllum demersum HOM05D000727 ORTHO05D000541 8.5e-12 73.9 57 57.9
MD00G1127400 Malus domestica HOM05D000727 ORTHO05D000541 8.5e-12 73.9 137 38.7
ClCG01G007990 Citrullus lanatus HOM05D000727 ORTHO05D000541 1.1e-11 73.6 92 48.9
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 1.1e-11 73.6 57 63.2
MELO3C027239.2 Cucumis melo HOM05D000727 ORTHO05D000541 1.5e-11 73.2 57 59.6
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 1.5e-11 73.2 54 59.3
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 2.5e-11 72.4 105 43.8
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 3.2e-11 72.0 75 53.3
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 4.2e-11 71.6 122 42.6
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 4.2e-11 71.6 53 58.5
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 5.5e-11 71.2 100 44.0
Lalb_Chr06g0164361 Lupinus albus HOM05D000727 ORTHO05D000541 5.5e-11 71.2 46 67.4
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 7.2e-11 70.9 106 45.3
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 7.2e-11 70.9 104 44.2
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 7.2e-11 70.9 52 65.4
FvH4_4g25270 Fragaria vesca HOM05D000727 ORTHO05D000541 1.2e-10 70.1 67 55.2
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 1.6e-10 69.7 70 55.7
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 2.7e-10 68.9 104 45.2
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 2.7e-10 68.9 99 45.5
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 2.7e-10 68.9 56 62.5
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 3.6e-10 68.6 107 40.2
Psat6g235800 Pisum sativum HOM05D000727 ORTHO05D000541 3.6e-10 68.6 107 41.1
arahy.Tifrunner.gnm1.ann1.K4HZ0A Arachis hypogaea HOM05D000727 ORTHO05D000541 4.7e-10 68.2 104 43.3
FAN12G2363 Fragaria x ananassa HOM05D000727 ORTHO05D000541 8.0e-10 67.4 79 51.9
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 3.0e-09 65.5 85 44.7
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 3.0e-09 65.5 99 40.4
C02p60870 Brassica napus HOM05D000727 ORTHO05D000541 5.2e-09 64.7 53 54.7
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 5.2e-09 64.7 53 54.7
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 6.8e-09 64.3 73 47.9
Nitab4.5_0007445g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 1.5e-08 63.2 70 54.3
CARHR190090 Cardamine hirsuta HOM05D000727 ORTHO05D000541 4.4e-08 61.6 50 56.0
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 9.8e-08 60.5 104 42.3
Zm00001eb198700 Zea mays HOM05D000727 ORTHO05D000541 9.8e-08 60.5 79 45.6
FvH4_4g14340 Fragaria vesca HOM05D000727 ORTHO05D000541 4.8e-07 58.2 56 55.4
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.1e-06 57.0 100 37.0
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 1.8e-06 56.2 74 43.2
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 2.4e-06 55.8 84 46.4
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 2.4e-06 55.8 78 43.6
FvH4_7g08880 Fragaria vesca HOM05D000727 ORTHO05D000541 4.1e-06 55.1 37 62.2
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 9.1e-06 53.9 49 49.0


User provided reference genes

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