Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.8e-243 845.5 432 100.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.1e-187 658.3 399 81.5
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 7.7e-186 654.1 399 82.5
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.2e-185 652.5 402 81.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.6e-183 646.4 393 81.9
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 8.0e-183 644.0 394 81.2
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.8e-182 642.9 415 77.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.0e-182 641.7 399 80.7
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.0e-182 641.7 394 81.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.2e-182 641.3 394 79.9
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.7e-182 641.0 394 81.0
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 4.8e-180 634.8 394 79.9
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 7.0e-179 630.9 405 76.5
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 7.0e-179 630.9 405 79.0
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.2e-178 630.2 399 77.9
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.6e-178 629.8 398 78.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.0e-177 627.1 399 77.9
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.9e-177 625.5 395 79.5
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.5e-176 623.2 404 77.7
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.2e-176 622.1 397 78.1
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.5e-176 621.3 405 77.3
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 5.5e-176 621.3 405 77.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 5.5e-176 621.3 404 75.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 9.4e-176 620.5 399 77.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.6e-175 619.8 427 74.2
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.6e-175 618.6 401 75.8
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.7e-175 618.2 427 74.0
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.4e-174 616.7 404 76.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.3e-174 615.9 399 76.7
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 6.8e-174 614.4 399 77.4
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.2e-173 613.6 410 74.6
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.5e-173 613.2 398 76.4
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.4e-173 612.1 399 76.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.4e-173 612.1 404 75.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.5e-173 610.9 396 76.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.3e-172 610.1 399 76.4
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 2.2e-172 609.4 395 76.5
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.4e-171 606.7 393 76.1
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.4e-171 606.7 415 72.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 7.0e-171 604.4 399 73.7
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.0e-170 602.8 398 75.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.0e-170 602.8 399 74.4
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 5.9e-170 601.3 403 73.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 5.9e-170 601.3 403 73.4
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.7e-169 599.7 399 74.2
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.9e-169 599.0 404 74.0
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.0e-169 598.2 399 75.4
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.6e-169 597.8 396 76.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 8.6e-169 597.4 386 77.2
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.1e-168 597.0 398 74.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.5e-168 596.7 398 73.9
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 3.3e-168 595.5 398 75.4
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 5.5e-168 594.7 386 76.4
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 5.5e-168 594.7 399 73.7
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 7.2e-168 594.3 402 74.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 9.5e-168 594.0 402 74.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-167 593.6 398 74.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.2e-167 593.6 401 71.6
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.2e-167 593.6 390 71.8
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.2e-167 593.6 398 74.9
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-167 592.8 402 74.1
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.1e-167 592.8 402 74.1
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.1e-167 592.8 441 68.9
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.1e-167 592.8 402 75.4
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 4.7e-167 591.7 402 74.1
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.7e-167 591.7 400 74.8
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.1e-167 591.3 402 73.4
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.0e-166 590.5 402 73.6
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.0e-166 590.5 388 76.3
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.4e-166 590.1 386 76.7
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-166 589.7 400 74.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.8e-166 589.7 400 72.2
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.8e-166 589.7 386 75.6
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.0e-166 589.0 386 76.2
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-166 588.6 402 74.1
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 4.0e-166 588.6 394 73.9
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 5.2e-166 588.2 413 71.9
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 6.8e-166 587.8 400 74.2
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 6.8e-166 587.8 394 74.4
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-165 586.6 393 73.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.0e-165 586.3 400 74.0
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.0e-165 586.3 396 74.0
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.6e-165 585.9 389 75.1
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.6e-165 585.9 393 73.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 3.4e-165 585.5 403 73.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 4.4e-165 585.1 398 72.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 5.7e-165 584.7 396 73.5
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 5.7e-165 584.7 396 73.5
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.3e-164 583.6 402 72.9
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.7e-164 582.0 400 73.8
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-163 580.5 398 70.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 9.2e-163 577.4 423 68.6
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.2e-162 577.0 407 71.0
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 5.9e-162 574.7 400 71.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.0e-161 573.9 366 79.2
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.3e-161 573.5 421 70.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.9e-161 572.0 405 72.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.8e-158 563.1 410 69.5
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-157 560.5 417 69.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.8e-157 557.4 391 71.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 8.3e-156 554.3 398 69.6
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.1e-155 553.9 394 70.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.4e-155 552.7 393 70.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.2e-155 552.4 500 58.6
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 6.2e-151 538.1 391 69.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 6.2e-151 538.1 413 65.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.8e-146 521.2 401 65.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.3e-145 520.4 403 66.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.0e-145 519.2 435 61.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 6.8e-142 508.1 390 65.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.4e-141 505.8 405 64.9
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.3e-140 503.8 350 74.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.7e-140 502.3 389 62.7
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 7.8e-138 494.6 402 62.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 7.3e-136 488.0 413 59.8
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-132 477.2 399 60.2
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.3e-129 467.2 395 59.2
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.6e-128 461.1 417 63.8
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.1e-127 459.9 285 78.2
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 2.8e-127 459.5 392 59.2
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 5.3e-126 455.3 397 56.4
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.2e-123 445.7 398 56.8
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.5e-120 436.4 402 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 3.3e-120 436.0 384 54.9
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.1e-111 406.8 261 79.3
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 4.8e-111 405.6 413 50.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 4.5e-109 399.1 414 49.8
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.0e-108 397.9 414 49.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 7.1e-107 391.7 403 49.4
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.9e-100 369.8 263 72.6
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.6e-98 364.0 251 70.1
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.3e-96 355.9 386 51.3
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.2e-95 351.7 395 49.1
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.3e-87 325.5 235 69.8
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-72 278.1 413 40.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.3e-71 274.6 198 67.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.6e-69 266.9 256 61.7
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 9.1e-62 241.9 399 39.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.7e-58 230.3 158 70.9
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.8e-57 225.3 130 78.5
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.1e-50 204.1 158 63.3
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.1e-46 191.8 125 69.6
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.0e-44 185.3 121 73.6
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 5.2e-41 172.9 118 73.7
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.2e-37 161.8 140 57.1
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.9e-30 137.9 94 70.2
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.6e-26 124.8 98 62.2
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.9e-23 114.0 72 75.0
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-19 102.1 80 66.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.5e-19 100.9 99 51.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.2e-18 98.6 84 61.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-16 92.0 60 78.3
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.0e-16 91.3 60 76.7
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.2e-15 87.8 63 69.8
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 4.2e-14 83.6 57 70.2
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 6.0e-13 79.7 77 54.5
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.4e-08 63.9 58 60.3
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 9.9e-08 62.4 37 83.8
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 1.9e-06 58.2 176 29.5


User provided reference genes

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