Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.7e-39 165.6 90 100.0
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.8e-20 102.4 79 70.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 5.2e-20 100.9 81 70.4
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 6.8e-20 100.5 79 74.7
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.8e-20 100.5 94 68.1
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.0e-19 99.0 79 72.2
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.6e-19 98.6 81 66.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.4e-19 98.2 92 67.4
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.4e-19 97.8 80 72.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.4e-19 97.8 70 78.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.8e-19 97.4 79 67.1
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 7.6e-19 97.1 77 72.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.7e-18 95.9 72 69.4
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.7e-18 95.9 74 71.6
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.9e-18 95.1 75 70.7
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 8.4e-18 93.6 70 77.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.9e-17 92.4 75 69.3
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.2e-17 91.3 71 71.8
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 7.1e-17 90.5 79 60.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.1e-17 90.5 79 60.8
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 9.2e-17 90.1 85 64.7
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.7e-16 88.6 83 65.1
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.7e-16 88.6 75 69.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.5e-16 88.2 88 58.0
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.5e-16 88.2 75 69.3
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.6e-16 87.8 80 62.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.0e-16 87.4 75 64.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 7.8e-16 87.0 75 66.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.0e-15 86.7 74 67.6
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.0e-15 86.7 72 63.9
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.3e-15 86.3 75 70.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.3e-15 86.3 75 70.7
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-15 85.9 71 70.4
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-15 85.9 95 57.9
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.7e-15 85.9 88 56.8
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.3e-15 85.5 68 70.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.3e-15 85.5 90 61.1
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.0e-15 85.1 74 64.9
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 3.9e-15 84.7 88 58.0
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.9e-15 84.7 72 65.3
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 5.1e-15 84.3 71 66.2
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.6e-15 84.0 81 63.0
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 8.7e-15 83.6 81 56.8
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 8.7e-15 83.6 72 62.5
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 8.7e-15 83.6 81 56.8
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 8.7e-15 83.6 81 56.8
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 8.7e-15 83.6 72 62.5
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 8.7e-15 83.6 90 53.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.7e-15 83.6 81 63.0
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.1e-14 83.2 60 75.0
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.1e-14 83.2 75 65.3
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.1e-14 83.2 64 73.4
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.1e-14 83.2 74 64.9
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.5e-14 82.8 72 65.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.5e-14 82.8 72 65.3
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.5e-14 82.8 83 59.0
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.9e-14 82.4 71 66.2
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.9e-14 82.4 74 63.5
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.5e-14 82.0 78 61.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.3e-14 81.6 72 61.1
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.3e-14 81.6 70 68.6
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.3e-14 81.3 72 59.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.3e-14 81.3 75 62.7
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 4.3e-14 81.3 72 62.5
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 4.3e-14 81.3 83 59.0
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 4.3e-14 81.3 86 57.0
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 7.3e-14 80.5 85 61.2
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 9.6e-14 80.1 72 59.7
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 9.6e-14 80.1 72 62.5
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.2e-13 79.7 68 63.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.6e-13 79.3 75 61.3
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.6e-13 79.3 79 59.5
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.6e-13 79.3 72 62.5
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 2.8e-13 78.6 78 57.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.8e-13 78.6 78 57.7
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.6e-13 78.2 72 56.9
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 4.7e-13 77.8 85 56.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 4.7e-13 77.8 64 67.2
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.7e-13 77.8 72 61.1
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 6.2e-13 77.4 74 62.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 6.2e-13 77.4 64 70.3
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 8.1e-13 77.0 72 61.1
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-12 76.6 65 63.1
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-12 76.6 72 59.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.1e-12 76.6 72 59.7
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.4e-12 76.3 84 56.0
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.8e-12 75.9 72 58.3
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-12 75.9 72 59.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.4e-12 75.5 69 62.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.4e-12 75.5 71 60.6
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.4e-12 75.5 88 52.3
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.1e-12 75.1 69 62.3
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-12 75.1 81 56.8
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.1e-12 75.1 65 63.1
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.1e-12 75.1 65 67.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.0e-12 74.7 65 61.5
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.0e-12 74.7 82 56.1
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.0e-12 74.7 82 56.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.0e-12 74.7 82 56.1
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.3e-12 74.3 74 62.2
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 6.9e-12 73.9 77 58.4
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.9e-12 73.9 84 56.0
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 6.9e-12 73.9 75 61.3
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 9.0e-12 73.6 72 61.1
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.0e-12 73.6 64 64.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.0e-12 73.6 73 60.3
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.5e-11 72.8 71 59.2
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 2.6e-11 72.0 63 66.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 3.4e-11 71.6 63 65.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.4e-11 71.6 63 65.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 5.8e-11 70.9 72 61.1
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 5.8e-11 70.9 73 60.3
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 5.8e-11 70.9 85 51.8
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 7.6e-11 70.5 71 56.3
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.9e-11 70.1 76 55.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.2e-10 68.9 67 55.2
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.2e-10 68.9 80 51.2
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.2e-10 68.9 82 52.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.9e-10 68.6 68 57.4
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.9e-10 68.6 64 62.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 8.4e-10 67.0 62 61.3
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.9e-09 65.9 83 56.6
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.9e-09 65.9 63 58.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 4.2e-09 64.7 69 60.9
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.4e-09 64.3 90 50.0
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 7.1e-09 63.9 63 60.3
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 7.1e-09 63.9 74 51.4
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.6e-08 62.8 71 54.9
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.6e-08 62.8 88 46.6
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.1e-08 62.4 63 65.1
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 2.7e-08 62.0 50 70.0
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.7e-08 62.0 81 46.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.7e-08 62.0 62 58.1
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 6.0e-08 60.8 69 58.0
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 6.0e-08 60.8 69 58.0
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.0e-08 60.8 75 50.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 6.0e-08 60.8 68 52.9
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 7.8e-08 60.5 59 59.3
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 1.3e-07 59.7 69 50.7
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 1.7e-07 59.3 67 53.7
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.3e-07 58.9 71 52.1
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 2.3e-07 58.9 59 61.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 5.1e-07 57.8 88 43.2
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 8.7e-07 57.0 75 44.0
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.1e-06 56.6 66 50.0
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.5e-06 56.2 90 42.2
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 1.5e-06 56.2 50 68.0
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.9e-06 55.8 75 49.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.6e-06 54.3 75 49.3
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 9.6e-06 53.5 54 57.4
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 9.6e-06 53.5 67 49.3


User provided reference genes

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