Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 5.5e-74 280.8 133 100.0
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.0e-64 250.0 133 84.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 4.3e-63 244.6 133 83.5
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 1.3e-62 243.0 133 82.7
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.3e-62 243.0 133 82.7
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.6e-62 242.7 133 82.7
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 2.8e-62 241.9 133 81.2
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 4.8e-62 241.1 133 83.5
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 82.0
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.1e-61 240.0 133 82.0
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.1e-61 240.0 133 81.2
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 1.4e-61 239.6 133 82.0
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.8e-61 239.2 133 80.5
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.8e-61 239.2 133 80.5
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.8e-61 239.2 133 81.2
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 6.9e-61 237.3 133 80.5
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 6.9e-61 237.3 133 80.5
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 9.0e-61 236.9 129 82.9
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 9.0e-61 236.9 133 80.5
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 9.0e-61 236.9 133 80.5
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.2e-60 236.5 129 81.4
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.2e-60 236.5 131 81.7
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 1.2e-60 236.5 131 80.9
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.5e-60 236.1 133 81.2
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 2.0e-60 235.7 133 78.9
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.0e-60 235.7 133 78.9
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.0e-60 235.7 133 78.9
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 2.6e-60 235.3 131 80.9
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.6e-60 235.3 133 78.9
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 2.6e-60 235.3 129 80.6
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 3.4e-60 235.0 129 81.4
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 3.4e-60 235.0 133 79.7
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 78.2
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 5.9e-60 234.2 130 79.2
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 7.7e-60 233.8 133 79.7
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 7.7e-60 233.8 133 78.2
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 78.2
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 80.0
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.7e-59 232.6 133 78.9
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 2.2e-59 232.3 133 78.2
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 2.9e-59 231.9 133 78.9
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 5.0e-59 231.1 133 78.2
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.1e-58 229.9 133 76.7
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 75.2
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 77.4
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 1.4e-58 229.6 130 79.2
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.9e-58 229.2 129 79.8
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 5.5e-58 227.6 130 76.9
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 7.2e-58 227.3 133 76.7
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 9.4e-58 226.9 133 76.7
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.2e-57 226.5 131 77.1
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.6e-57 226.1 135 76.3
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 2.1e-57 225.7 129 78.3
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 3.6e-57 224.9 131 78.6
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 4.6e-57 224.6 133 77.4
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 6.1e-57 224.2 133 78.2
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.4e-56 223.0 135 76.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 1.4e-56 223.0 135 76.3
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 2.3e-56 222.2 133 75.2
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 2.3e-56 222.2 135 75.6
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 2.3e-56 222.2 134 76.1
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 3.9e-56 221.5 133 76.7
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.9e-56 221.5 129 75.2
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 3.9e-56 221.5 133 75.2
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 3.9e-56 221.5 127 78.7
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 1.1e-55 219.9 133 74.4
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.5e-55 218.8 129 75.2
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 2.5e-55 218.8 133 72.9
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.3e-55 218.4 175 61.1
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 4.3e-55 218.0 130 74.6
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 4.3e-55 218.0 130 72.3
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.8e-54 215.3 130 76.2
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 2.8e-54 215.3 133 75.9
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 4.8e-54 214.5 137 74.5
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 1.4e-53 213.0 129 76.0
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 3.1e-53 211.8 133 75.2
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 3.4e-52 208.4 130 69.2
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 5.9e-52 207.6 131 70.2
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.9e-50 202.6 129 69.8
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 4.2e-50 201.4 129 67.4
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.1e-49 199.1 130 66.2
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 7.9e-49 197.2 130 67.7
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 1.8e-48 196.1 130 66.9
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 6.7e-48 194.1 227 46.3
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 2.4e-45 185.7 113 74.3
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 9.1e-45 183.7 131 63.4
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 1.2e-44 183.3 131 63.4
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 2.6e-44 182.2 132 62.1
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 3.5e-44 181.8 131 61.8
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 3.5e-44 181.8 131 61.8
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 3.5e-44 181.8 131 61.8
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 4.5e-44 181.4 131 61.1
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 4.5e-44 181.4 131 61.1
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 4.5e-44 181.4 122 66.4
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.3e-43 179.9 132 62.1
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.7e-43 179.5 133 63.2
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 6.5e-43 177.6 131 61.8
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 1.4e-42 176.4 131 61.1
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 2.1e-41 172.6 156 55.1
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 8.0e-41 170.6 131 58.0
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 3.0e-40 168.7 130 56.2
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 5.2e-40 167.9 131 58.8
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 3.3e-39 165.2 132 57.6
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 2.2e-38 162.5 129 52.7
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 4.8e-38 161.4 137 54.0
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 7.7e-36 154.1 133 54.9
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 8.5e-35 150.6 130 53.1
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.1e-34 150.2 85 76.5
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.5e-34 149.8 85 81.2
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.5e-34 149.1 102 64.7
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 3.2e-34 148.7 131 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 1.6e-33 146.4 129 51.9
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 2.3e-32 142.5 131 50.4
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 3.1e-29 132.1 83 71.1
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.0e-28 129.4 75 78.7
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 4.7e-25 118.2 109 54.1
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 6.8e-24 114.4 67 73.1
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.4e-21 105.9 72 72.2
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 1.5e-18 96.7 119 41.2
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 5.5e-18 94.7 55 67.3
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.4e-13 80.1 48 72.9
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 5.4e-13 78.2 48 68.8
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.9e-10 69.7 42 73.8
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 9.5e-10 67.4 53 58.5
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.4e-08 63.5 47 61.7


User provided reference genes

Program Settings