Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.7e-218 762.3 369 100.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.7e-194 682.6 369 88.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 2.4e-188 662.1 369 88.3
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.1e-184 649.0 365 85.2
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.8e-184 648.7 365 84.4
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 4.7e-184 647.9 368 84.2
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.3e-183 645.6 366 84.4
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 5.8e-182 641.0 369 83.5
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.3e-181 639.8 440 73.4
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 8.3e-181 637.1 369 83.7
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.4e-180 636.3 372 83.6
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.4e-180 635.6 369 83.5
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.4e-180 635.6 369 82.4
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.2e-179 633.3 372 83.1
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.6e-179 632.9 367 83.4
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.1e-179 632.5 367 83.4
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.0e-179 630.9 368 81.8
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.3e-177 624.0 369 81.6
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.1e-176 622.5 392 77.8
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.1e-176 622.5 367 81.5
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.6e-176 621.7 369 81.0
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 4.7e-176 621.3 367 81.5
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 6.2e-176 620.9 374 81.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.0e-175 618.2 367 80.1
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 6.8e-175 617.5 369 80.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 6.8e-175 617.5 368 80.2
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 8.9e-175 617.1 368 80.2
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 8.9e-175 617.1 367 82.0
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.2e-174 616.7 366 81.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.2e-174 616.7 365 80.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.4e-174 615.1 370 80.3
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 4.4e-174 614.8 368 79.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.4e-174 614.8 370 80.0
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.4e-174 614.8 370 80.0
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 5.8e-174 614.4 369 80.5
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.7e-173 612.8 369 80.5
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.2e-173 612.5 367 79.6
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.9e-173 612.1 366 80.6
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 4.9e-173 611.3 365 80.3
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.1e-172 610.1 365 80.5
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.9e-172 609.4 370 79.5
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 5.4e-172 607.8 367 79.0
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-171 606.7 367 79.3
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.6e-171 606.3 369 79.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.7e-171 605.5 369 78.0
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 4.6e-171 604.7 370 79.2
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.0e-170 603.6 365 80.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.0e-170 603.6 369 78.9
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.3e-170 602.4 365 80.0
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.3e-170 602.4 365 80.0
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 3.0e-170 602.1 369 78.6
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 3.0e-170 602.1 369 78.6
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.0e-170 602.1 366 79.5
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.1e-169 600.1 369 78.0
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.1e-169 600.1 367 79.3
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.1e-169 600.1 365 79.5
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.9e-169 599.4 367 79.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.9e-169 599.4 367 79.3
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.5e-169 599.0 363 79.6
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.5e-169 599.0 365 80.0
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.3e-169 598.6 367 79.0
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.3e-169 598.6 367 79.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 5.6e-169 597.8 365 79.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.6e-168 596.3 364 80.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.1e-168 595.9 369 78.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.8e-168 595.5 365 78.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 4.7e-168 594.7 369 77.8
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 8.1e-168 594.0 370 77.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.1e-167 593.6 362 79.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.4e-167 593.2 369 75.9
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.8e-167 592.8 369 77.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.1e-167 592.0 367 77.7
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 3.1e-167 592.0 369 77.5
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 4.0e-167 591.7 364 78.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 6.8e-167 590.9 365 78.9
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 6.8e-167 590.9 369 75.9
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 1.2e-166 590.1 369 76.7
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.2e-166 590.1 368 79.1
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.0e-166 589.3 369 76.2
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.0e-166 589.3 368 78.8
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.2e-165 585.9 367 76.0
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 8.4e-165 583.9 364 78.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.1e-164 583.6 363 77.7
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.4e-164 582.4 397 72.5
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 9.2e-164 580.5 365 75.6
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.6e-163 579.7 365 77.0
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.9e-162 575.1 369 75.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 6.6e-162 574.3 366 74.6
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.1e-161 573.5 365 77.0
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.9e-161 572.8 369 73.7
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.9e-161 572.8 363 74.9
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 9.6e-161 570.5 365 75.9
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 3.6e-160 568.5 421 69.8
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 8.1e-160 567.4 366 73.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.4e-158 562.0 459 63.4
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 1.3e-157 560.1 360 74.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.3e-154 550.1 337 79.5
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 3.0e-154 548.9 363 72.2
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.0e-154 548.9 462 61.0
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 3.3e-153 545.4 359 73.3
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.8e-152 542.3 363 70.5
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-150 536.6 364 70.9
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 4.5e-150 535.0 365 68.2
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.3e-149 533.5 367 68.9
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.9e-149 532.3 364 69.5
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 2.9e-149 532.3 367 69.2
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 3.2e-148 528.9 391 70.3
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 6.0e-147 524.6 372 67.2
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 7.9e-147 524.2 520 54.8
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 9.6e-145 517.3 360 68.1
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.6e-142 509.2 274 89.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 3.2e-140 502.3 366 64.5
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 6.9e-135 484.6 365 61.9
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 7.6e-134 481.1 362 62.2
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.9e-129 466.5 255 86.7
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 5.3e-127 458.4 273 81.0
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 3.8e-125 452.2 350 67.1
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.4e-122 443.7 385 57.4
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 7.4e-113 411.4 280 72.5
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.0e-106 391.0 353 56.7
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.7e-105 385.2 344 56.1
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 2.1e-99 366.7 350 51.4
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.4e-98 364.0 241 69.7
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 3.5e-86 322.8 271 62.0
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 8.6e-85 318.2 231 66.7
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.3e-82 310.1 182 82.4
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.3e-82 310.1 206 73.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.4e-79 300.8 164 86.6
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.7e-77 293.9 162 85.2
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-76 291.2 179 74.3
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.8e-67 260.0 358 42.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.2e-65 254.6 189 68.3
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.4e-58 231.1 181 61.3
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.3e-52 209.9 118 85.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.7e-48 197.6 170 60.6
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 5.1e-45 186.0 106 79.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.4e-39 166.0 107 75.7
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.1e-37 159.5 90 84.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 6.9e-26 122.5 185 41.6
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 5.8e-25 119.4 94 66.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.3e-19 101.7 232 30.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.6e-19 101.3 77 63.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 3.7e-19 100.1 62 74.2
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.8e-19 99.8 112 51.8
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.8e-17 92.8 55 74.5
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.0e-16 92.0 86 57.0
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 2.2e-16 90.9 48 87.5
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 2.7e-14 84.0 47 78.7
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.3e-08 65.1 72 45.8
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 5.0e-08 63.2 37 78.4
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 7.2e-07 59.3 43 60.5
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 2.7e-06 57.4 258 22.9


User provided reference genes

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