Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 9.0e-204 713.4 362 100.0
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.1e-156 557.0 361 78.7
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.1e-156 555.1 361 79.5
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 2.6e-155 552.4 361 78.1
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 3.6e-152 542.0 361 78.1
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.7e-150 534.6 361 76.7
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 7.5e-150 534.3 361 76.7
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-149 533.1 363 76.9
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.8e-149 531.6 361 76.5
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.1e-148 530.4 361 75.3
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 7.0e-148 527.7 363 74.9
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.5e-147 525.4 362 73.2
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.5e-147 525.4 361 74.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 5.9e-147 524.6 362 72.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 5.9e-147 524.6 366 73.0
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 5.0e-146 521.5 363 73.8
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.9e-145 519.6 356 74.7
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 4.7e-144 515.0 361 72.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.0e-143 513.8 363 74.1
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.8e-143 513.1 363 72.2
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 8.8e-143 510.8 361 73.4
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.4e-142 508.8 367 72.5
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.4e-142 508.4 360 71.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 7.5e-142 507.7 361 72.9
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.3e-141 506.9 360 69.7
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.3e-141 506.9 358 73.2
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 2.2e-141 506.1 357 73.4
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.8e-141 505.8 363 71.1
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 4.8e-141 505.0 380 69.5
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 6.3e-141 504.6 360 70.8
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.1e-140 503.8 327 78.6
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.4e-140 503.4 362 72.9
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.4e-140 503.4 367 71.4
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.4e-140 503.4 367 71.1
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 4.1e-140 501.9 367 71.7
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 5.4e-140 501.5 368 72.0
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.0e-138 497.3 360 67.8
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.7e-138 496.5 327 77.4
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 8.5e-138 494.2 296 86.5
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 8.5e-138 494.2 363 72.2
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.9e-137 493.0 361 71.7
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 7.2e-137 491.1 365 70.4
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 7.2e-137 491.1 325 72.3
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 9.5e-137 490.7 357 70.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 9.5e-137 490.7 363 71.9
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.2e-136 490.3 351 71.2
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.7e-136 488.4 357 69.7
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 8.0e-136 487.6 327 74.9
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 3.0e-135 485.7 366 69.9
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.0e-135 485.3 364 69.8
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-134 483.8 364 70.1
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.4e-134 482.3 356 64.6
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.8e-134 480.7 351 67.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.2e-133 479.6 378 65.6
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.8e-132 476.5 357 69.2
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.8e-132 476.5 356 65.2
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.2e-131 473.8 322 76.4
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 3.5e-131 472.2 364 67.0
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 4.5e-131 471.9 328 72.3
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 4.5e-131 471.9 352 70.5
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.5e-131 471.9 427 60.7
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 7.8e-131 471.1 363 69.1
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 1.3e-130 470.3 328 72.3
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.3e-130 470.3 359 65.2
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 1.7e-130 469.9 330 73.6
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.7e-130 469.9 328 72.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.7e-130 469.9 359 65.2
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.6e-130 468.0 364 66.2
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.9e-129 466.5 356 68.8
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.9e-129 466.5 361 67.6
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.2e-128 463.8 359 68.0
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.0e-126 456.4 362 66.3
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.4e-126 455.7 363 65.8
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 5.7e-126 454.9 354 66.9
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.7e-126 454.9 364 67.9
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.7e-125 453.4 361 65.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 4.9e-125 451.8 340 66.8
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 8.3e-125 451.1 353 67.4
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.4e-124 449.5 361 65.7
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.6e-123 446.8 364 64.8
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.5e-123 445.7 433 56.6
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.7e-122 443.4 362 64.9
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.0e-122 442.6 352 61.6
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.5e-121 440.3 358 65.4
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.9e-121 439.9 360 58.6
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 5.6e-121 438.3 374 63.1
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.8e-120 436.0 279 72.8
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 8.0e-120 434.5 357 62.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.0e-119 434.1 360 63.6
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.8e-119 433.3 353 64.0
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.1e-119 432.6 330 69.7
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.1e-119 432.6 360 64.4
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 7.5e-118 427.9 318 70.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.4e-116 423.7 360 63.1
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 3.2e-116 422.5 328 68.6
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.2e-116 422.5 363 63.6
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 9.2e-116 421.0 329 67.5
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 8.6e-114 414.5 359 63.0
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.7e-112 408.7 367 61.9
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.8e-111 406.8 324 68.5
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.2e-110 404.1 324 68.2
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.5e-110 403.7 360 58.9
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.0e-110 403.3 367 61.0
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 5.8e-110 401.7 327 64.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 6.4e-109 398.3 327 64.5
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.4e-108 395.2 286 73.4
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-107 393.7 361 59.3
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-106 390.2 361 54.3
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 5.1e-106 388.7 326 62.3
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.9e-105 386.7 358 58.9
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 2.5e-105 386.3 357 57.4
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 3.3e-105 386.0 360 57.8
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 3.3e-105 386.0 358 59.8
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 5.6e-105 385.2 327 64.5
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 7.3e-105 384.8 350 61.4
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.2e-104 384.0 275 67.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.6e-104 383.6 346 59.5
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 4.7e-104 382.1 349 60.2
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 8.1e-104 381.3 346 60.4
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.2e-102 377.5 351 51.9
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 8.4e-101 371.3 296 65.2
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.1e-97 360.9 414 50.5
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.3e-97 359.4 286 59.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 4.0e-95 352.4 273 63.7
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 6.9e-95 351.7 226 71.2
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-94 350.9 335 54.6
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 8.4e-93 344.7 350 53.7
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.4e-92 343.2 298 63.1
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.6e-91 340.5 361 55.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.1e-91 340.1 226 69.5
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 7.8e-91 338.2 337 55.5
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.0e-90 337.8 333 51.7
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.3e-90 336.7 264 60.2
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.1e-90 335.5 333 56.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.5e-89 334.0 362 51.9
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.1e-88 330.1 360 53.1
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.9e-85 319.7 333 48.3
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.4e-84 317.4 329 48.6
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 7.1e-84 315.1 231 64.9
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.3e-84 314.7 361 47.4
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 4.3e-81 305.8 335 54.3
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.6e-80 303.9 334 54.5
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 4.8e-80 302.4 330 53.9
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 8.1e-80 301.6 332 54.5
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 8.1e-80 301.6 332 55.1
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.8e-79 300.4 333 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 2.6e-78 296.6 324 53.7
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.4e-76 290.0 338 51.8
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 7.1e-76 288.5 334 52.7
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.6e-75 287.3 332 53.3
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.3e-74 284.3 329 50.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.8e-74 283.9 331 51.4
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.6e-72 277.3 340 50.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.1e-72 276.9 334 50.3
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.3e-66 256.9 201 60.7
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 3.2e-60 236.5 224 46.9
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-56 224.2 320 41.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 4.8e-56 222.6 333 45.6
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.2e-52 209.9 177 57.1
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 7.2e-52 208.8 373 38.9
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.6e-51 207.6 320 40.9
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.0e-50 203.4 108 85.2
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.6e-49 200.3 108 84.3
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.4e-41 172.2 93 81.7
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 9.8e-17 92.0 102 41.2
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 3.5e-14 83.6 76 68.4
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.9e-12 77.8 38 84.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.3e-12 77.0 48 68.8
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 6.1e-11 72.8 41 82.9
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 1.3e-08 65.1 44 68.2
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 1.7e-08 64.7 82 50.0
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 3.7e-08 63.5 44 65.9
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 1.4e-07 61.6 40 70.0
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 1.4e-07 61.6 40 70.0
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 7.8e-06 55.8 32 81.2
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 7.8e-06 55.8 30 83.3


User provided reference genes

Program Settings