Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 6.1e-32 140.2 70 100.0
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.7e-27 123.2 69 88.4
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.8e-23 112.1 69 81.2
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.8e-23 112.1 69 81.2
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 8.8e-23 109.8 69 79.7
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.1e-22 109.4 69 79.7
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.5e-22 109.0 66 80.3
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.3e-22 107.8 70 78.6
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.4e-22 107.5 69 76.8
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.8e-21 104.8 67 77.6
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.2e-21 103.2 65 76.9
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.4e-20 101.7 67 76.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 3.1e-20 101.3 66 77.3
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.5e-19 99.0 65 73.8
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 2.6e-19 98.2 64 76.6
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 2.6e-19 98.2 66 72.7
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 3.4e-19 97.8 66 71.2
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 5.9e-19 97.1 65 72.3
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 5.9e-19 97.1 66 66.7
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.7e-18 95.5 66 69.7
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.7e-18 95.5 66 69.7
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 3.8e-18 94.4 68 69.1
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 5.0e-18 94.0 64 67.2
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-17 92.8 66 72.7
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-17 92.8 66 72.7
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.1e-17 92.8 66 66.7
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.4e-17 92.4 64 68.8
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.4e-17 92.4 64 68.8
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.4e-17 92.4 64 67.2
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.4e-17 92.4 65 70.8
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.4e-17 92.4 64 68.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.9e-17 92.0 64 68.8
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-17 92.0 65 69.2
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.5e-17 91.7 66 71.2
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 65 64.6
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.2e-16 89.4 65 64.6
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.6e-16 89.0 62 71.0
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.1e-16 88.6 69 63.8
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.7e-16 88.2 69 63.8
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.7e-16 88.2 69 63.8
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 4.7e-16 87.4 64 60.9
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.0e-15 86.3 64 64.1
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.0e-15 86.3 64 64.1
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.4e-15 85.9 57 75.4
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 3.0e-15 84.7 62 67.7
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 3.9e-15 84.3 66 62.1
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 5.2e-15 84.0 63 66.7
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 5.2e-15 84.0 62 67.7
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 5.2e-15 84.0 65 64.6
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 6.7e-15 83.6 64 64.1
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 6.7e-15 83.6 65 64.6
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 6.7e-15 83.6 62 66.1
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 8.8e-15 83.2 62 62.9
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 8.8e-15 83.2 62 62.9
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 8.8e-15 83.2 62 62.9
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 8.8e-15 83.2 56 73.2
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 8.8e-15 83.2 56 73.2
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.1e-14 82.8 66 59.1
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.6e-14 81.6 66 59.1
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.6e-14 81.6 62 67.7
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.6e-14 81.6 56 73.2
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 2.6e-14 81.6 66 59.1
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.6e-14 81.6 56 71.4
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 3.3e-14 81.3 59 64.4
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 3.3e-14 81.3 59 62.7
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.3e-14 81.3 66 62.1
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 4.4e-14 80.9 59 69.5
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.4e-14 80.9 62 67.7
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 4.4e-14 80.9 49 79.6
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 5.7e-14 80.5 66 57.6
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 5.7e-14 80.5 62 66.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.7e-14 80.5 62 64.5
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 5.7e-14 80.5 61 67.2
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 5.7e-14 80.5 66 57.6
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 7.4e-14 80.1 64 62.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 7.4e-14 80.1 62 59.7
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 7.4e-14 80.1 59 62.7
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 7.4e-14 80.1 66 62.1
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 7.4e-14 80.1 62 67.7
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.3e-13 79.3 56 69.6
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.3e-13 79.3 62 64.5
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.3e-13 79.3 66 59.1
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.3e-13 79.3 67 67.2
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 1.7e-13 79.0 63 63.5
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-13 78.6 62 62.9
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-13 78.6 62 62.9
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.2e-13 78.6 63 60.3
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.2e-13 78.6 56 71.4
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 2.8e-13 78.2 58 62.1
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.8e-13 78.2 61 67.2
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.8e-13 78.2 62 66.1
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.7e-13 77.8 63 63.5
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 3.7e-13 77.8 62 62.9
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.8e-13 77.4 60 63.3
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 6.3e-13 77.0 56 69.6
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.1e-12 76.3 56 60.7
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.1e-12 76.3 66 59.1
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.1e-12 76.3 66 59.1
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.1e-12 76.3 66 59.1
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.1e-12 76.3 51 72.5
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.1e-12 76.3 58 67.2
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.4e-12 75.9 67 56.7
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.8e-12 75.5 58 65.5
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.8e-12 75.5 58 65.5
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.4e-12 75.1 56 58.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.4e-12 75.1 56 58.9
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.4e-12 75.1 62 61.3
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.4e-12 75.1 62 61.3
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.4e-12 75.1 66 54.5
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 3.1e-12 74.7 62 66.1
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.1e-12 74.3 55 69.1
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.1e-12 74.3 62 58.1
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 5.3e-12 73.9 62 64.5
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.0e-12 73.6 58 63.8
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 7.0e-12 73.6 58 62.1
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.2e-11 72.8 59 59.3
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 1.2e-11 72.8 66 56.1
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 1.6e-11 72.4 53 64.2
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-11 72.4 64 57.8
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-11 72.4 62 62.9
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.6e-11 72.4 60 58.3
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.6e-11 72.4 60 58.3
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.0e-11 72.0 66 54.5
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 2.0e-11 72.0 66 62.1
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.5e-11 70.9 62 58.1
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.5e-11 70.9 59 55.9
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.5e-11 70.9 64 53.1
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 7.7e-11 70.1 59 54.2
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.7e-11 70.1 64 50.0
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 7.7e-11 70.1 64 50.0
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 7.7e-11 70.1 66 60.6
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 55.9
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 55.9
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.2e-10 68.6 62 59.7
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 2.2e-10 68.6 66 59.1
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.2e-10 68.6 55 61.8
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 2.9e-10 68.2 58 58.6
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 3.8e-10 67.8 59 54.2
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 3.8e-10 67.8 59 54.2
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 3.8e-10 67.8 59 54.2
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 6.5e-10 67.0 39 84.6
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 6.5e-10 67.0 58 60.3
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 8.5e-10 66.6 58 63.8
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 56.5
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 56.5
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 1.1e-09 66.2 58 60.3
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 1.5e-09 65.9 66 51.5
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 4.2e-09 64.3 54 55.6
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 4.2e-09 64.3 58 58.6
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 5.5e-09 63.9 56 55.4
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 5.5e-09 63.9 56 55.4
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.5e-09 63.9 52 59.6
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 7.2e-09 63.5 62 51.6
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 9.4e-09 63.2 58 58.6
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.6e-08 62.4 61 52.5
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 2.7e-08 61.6 74 44.6
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 4.7e-08 60.8 62 48.4
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 6.1e-08 60.5 59 52.5
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 6.1e-08 60.5 61 55.7
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.0e-08 60.1 59 54.2
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.0e-08 60.1 59 54.2
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.4e-07 59.3 62 45.2
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 3.0e-07 58.2 62 46.8
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 5.2e-07 57.4 57 56.1
Zm00001eb124050 Zea mays HOM05D000586 ORTHO05D443244 1.5e-06 55.8 58 55.2
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 2.0e-06 55.5 59 49.2
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.3e-06 54.7 50 50.0


User provided reference genes

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