Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 6.8e-215 750.4 374 100.0
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.0e-186 655.2 377 85.4
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.4e-182 641.7 377 84.1
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 1.5e-174 616.3 380 81.1
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 3.2e-172 608.6 380 79.5
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 9.3e-172 607.1 425 73.9
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 1.2e-171 606.7 383 79.9
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 2.7e-171 605.5 380 80.0
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.5e-169 599.7 380 77.9
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 1.5e-169 599.7 380 77.9
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 4.3e-169 598.2 384 77.1
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 5.7e-169 597.8 383 78.6
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 2.8e-168 595.5 380 79.2
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 2.8e-168 595.5 380 79.2
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 3.7e-168 595.1 380 80.0
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.7e-168 595.1 380 80.0
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 4.8e-168 594.7 380 79.5
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.8e-168 594.7 382 79.6
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 8.2e-168 594.0 376 79.8
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.4e-167 593.2 382 79.3
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.1e-167 592.0 382 79.3
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 9.1e-167 590.5 380 77.6
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 2.0e-166 589.3 382 78.0
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 7.7e-166 587.4 388 76.0
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 3.8e-165 585.1 381 78.2
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 5.0e-165 584.7 382 77.7
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 1.4e-164 583.2 384 76.6
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 1.9e-164 582.8 376 77.4
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 1.2e-163 580.1 382 77.7
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.6e-163 579.7 381 76.4
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 2.1e-163 579.3 393 74.8
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 2.7e-163 578.9 398 74.4
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 2.7e-163 578.9 382 76.7
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 3.6e-163 578.6 383 76.2
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 3.6e-163 578.6 388 75.8
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 5.1e-162 574.7 378 76.7
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 1.1e-161 573.5 381 76.4
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 1.1e-161 573.5 383 76.2
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 3.3e-161 572.0 383 75.7
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 4.4e-161 571.6 389 74.0
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.4e-161 571.6 388 74.0
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 5.7e-161 571.2 389 75.3
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 7.4e-161 570.9 383 76.2
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 9.7e-161 570.5 385 76.1
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 9.7e-161 570.5 383 75.5
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.4e-159 566.6 388 74.0
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.4e-159 566.6 389 73.3
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 3.1e-159 565.5 394 73.9
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 1.5e-158 563.1 392 74.0
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 2.6e-158 562.4 378 74.9
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 5.0e-157 558.1 378 74.6
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 4.2e-156 555.1 382 74.9
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 4.2e-156 555.1 382 74.9
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 4.2e-156 555.1 383 74.2
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 4.2e-156 555.1 387 73.6
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 7.2e-156 554.3 378 74.1
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.2e-155 553.5 387 73.9
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 1.2e-155 553.5 383 72.8
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 1.2e-155 553.5 299 88.6
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 1.4e-154 550.1 368 74.2
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.8e-154 549.7 378 73.3
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 2.3e-154 549.3 372 72.8
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 3.9e-154 548.5 377 72.9
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 6.7e-154 547.7 382 73.6
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 6.7e-154 547.7 329 79.9
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.6e-153 545.8 378 74.3
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 3.3e-153 545.4 383 73.4
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 5.7e-153 544.7 329 79.3
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.1e-151 540.4 330 79.7
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 2.4e-151 539.3 388 70.6
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 3.1e-151 538.9 385 69.6
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 7.0e-151 537.7 334 78.1
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 3.5e-150 535.4 459 63.4
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 2.2e-149 532.7 380 72.6
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 1.1e-148 530.4 377 71.6
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.9e-148 529.6 381 71.4
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.5e-145 520.0 423 65.7
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 4.4e-145 518.5 361 70.9
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 2.8e-144 515.8 387 70.0
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 2.8e-144 515.8 377 70.6
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 4.8e-144 515.0 304 78.9
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.8e-144 515.0 390 68.5
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.4e-143 513.5 491 58.5
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 7.0e-143 511.1 383 68.4
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.3e-141 506.9 377 69.8
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.2e-141 506.1 283 85.2
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 5.0e-141 505.0 380 66.3
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.7e-139 499.2 380 69.5
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 8.0e-139 497.7 390 66.4
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.4e-137 491.9 390 65.6
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 9.8e-137 490.7 397 67.0
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 9.1e-135 484.2 380 66.3
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 1.7e-133 479.9 296 77.7
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 8.6e-133 477.6 290 79.3
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 1.5e-129 466.8 306 71.9
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 7.5e-121 438.0 381 63.8
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.9e-119 433.3 317 71.9
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 1.3e-117 427.2 356 64.6
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 2.3e-109 399.8 321 59.2
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 6.6e-109 398.3 363 55.6
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 1.9e-108 396.7 228 81.1
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 2.3e-106 389.8 293 61.1
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 7.8e-102 374.8 213 81.2
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.3e-101 374.0 213 81.2
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.3e-101 374.0 213 81.2
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 6.6e-101 371.7 293 59.4
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 1.2e-97 360.9 213 81.7
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 3.4e-97 359.4 247 72.9
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.1e-95 354.4 225 72.9
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 3.8e-88 329.3 291 61.5
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 3.9e-85 319.3 290 52.1
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 8.4e-80 301.6 230 67.4
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.6e-75 287.3 177 78.0
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 1.8e-74 283.9 285 46.7
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 2.6e-73 280.0 304 44.7
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 7.4e-68 261.9 157 82.2
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 2.1e-67 260.4 278 46.0
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 2.8e-59 233.4 135 83.7
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 6.1e-46 189.1 162 64.8
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 4.5e-41 172.9 161 51.6
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.2e-40 170.6 108 72.2
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 1.4e-34 151.4 108 66.7
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 5.5e-31 139.4 97 64.9
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.1e-30 136.0 165 49.7
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 9.7e-28 128.6 87 69.0
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 8.8e-21 105.5 64 73.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 1.7e-16 91.3 48 85.4
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 1.7e-16 91.3 48 85.4
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.7e-11 74.7 107 50.5
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 1.0e-08 65.5 41 73.2
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 6.1e-06 56.2 43 60.5


User provided reference genes

Program Settings