Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.4e-177 626.7 402 100.0
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 3.7e-165 585.5 402 89.6
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 2.2e-162 576.2 402 92.0
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 4.4e-158 562.0 402 77.6
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.4e-158 562.0 401 89.5
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.2e-157 559.7 402 90.8
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 3.7e-157 558.9 399 91.2
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.4e-156 557.0 401 87.3
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 6.9e-156 554.7 402 89.3
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 2.6e-155 552.7 402 88.6
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.3e-154 550.4 399 89.0
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 3.8e-154 548.9 399 90.0
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 5.0e-154 548.5 401 78.6
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 5.0e-154 548.5 408 88.7
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 8.5e-154 547.7 398 88.2
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.2e-153 545.4 408 86.5
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.2e-152 543.9 399 88.2
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.2e-152 543.9 399 88.2
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.1e-152 543.1 399 89.7
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.1e-152 543.1 399 89.2
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 2.7e-152 542.7 399 87.5
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.7e-152 542.7 399 89.2
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 6.1e-152 541.6 399 89.0
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.4e-151 540.4 401 86.3
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 3.9e-151 538.9 399 88.2
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 5.2e-151 538.5 399 87.2
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 5.2e-151 538.5 399 87.2
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 8.8e-151 537.7 401 81.0
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.1e-150 537.3 399 88.0
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 1.1e-150 537.3 402 89.6
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.5e-150 537.0 402 85.3
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.5e-150 537.0 396 89.1
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 2.6e-150 536.2 400 88.2
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 7.4e-150 534.6 399 87.0
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 7.4e-150 534.6 403 88.1
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.3e-149 533.9 399 86.7
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 1.7e-149 533.5 393 89.1
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 2.8e-149 532.7 401 85.5
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 3.7e-149 532.3 398 87.7
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 4.8e-149 531.9 392 88.3
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 8.2e-149 531.2 401 77.1
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 8.2e-149 531.2 399 87.2
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 1.4e-148 530.4 394 87.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.4e-148 530.4 401 85.3
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 9.1e-148 527.7 401 81.0
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 9.1e-148 527.7 401 81.0
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-147 527.3 409 71.9
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.6e-147 526.9 401 81.0
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 4.5e-147 525.4 401 79.8
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 5.9e-147 525.0 401 85.0
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.0e-146 524.2 400 84.8
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 2.2e-146 523.1 399 85.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 6.5e-146 521.5 394 86.3
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.9e-145 520.0 402 86.1
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 4.2e-145 518.8 409 79.2
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 7.2e-145 518.1 402 82.3
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 7.2e-145 518.1 401 78.1
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 8.0e-144 514.6 401 72.6
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.3e-143 513.1 394 75.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.7e-143 511.5 393 75.3
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 2.6e-142 509.6 413 73.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.2e-141 506.5 421 71.0
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.2e-141 506.5 421 71.0
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 4.8e-141 505.4 392 75.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 6.3e-141 505.0 402 73.6
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 8.2e-141 504.6 399 85.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 7.0e-140 501.5 391 85.4
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 7.0e-140 501.5 414 79.7
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 7.0e-140 501.5 404 84.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 9.1e-140 501.1 396 77.0
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 5.9e-139 498.4 391 76.2
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.6e-136 490.3 403 73.7
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.6e-136 490.3 403 69.2
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 8.0e-136 488.0 406 73.4
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-135 487.3 406 73.4
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.8e-135 486.9 406 73.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 9.8e-134 481.1 389 76.6
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 9.8e-134 481.1 519 65.7
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.8e-133 479.6 395 68.6
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.4e-132 477.2 401 71.3
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 9.1e-132 474.6 401 80.3
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.2e-131 474.2 401 79.8
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.2e-131 474.2 426 68.1
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.6e-131 473.8 401 80.0
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.5e-131 472.6 398 77.4
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.9e-131 471.9 390 80.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 7.7e-131 471.5 392 78.3
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-130 469.9 392 78.1
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-130 469.9 392 78.1
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.3e-130 469.9 392 78.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 8.6e-130 468.0 393 77.6
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.5e-129 467.2 390 77.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.5e-129 467.2 514 64.4
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.9e-129 466.8 402 75.1
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.6e-128 463.8 399 78.7
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 4.7e-128 462.2 392 77.3
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 4.7e-128 462.2 392 77.3
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.8e-127 460.3 388 78.6
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 3.0e-127 459.5 399 74.7
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.2e-127 458.8 426 67.1
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 6.8e-127 458.4 356 85.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.5e-126 457.2 401 68.3
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.0e-126 456.8 396 78.5
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 3.4e-126 456.1 403 74.9
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.8e-125 453.0 389 71.5
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 7.0e-124 448.4 396 69.9
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 6.4e-117 425.2 389 73.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-113 412.9 393 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.8e-111 407.1 402 66.9
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.3e-111 406.8 406 57.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 4.9e-109 399.1 391 76.0
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.2e-108 396.4 405 55.8
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 4.1e-108 396.0 400 57.8
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 5.4e-108 395.6 404 58.7
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 5.4e-108 395.6 404 58.7
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 7.0e-108 395.2 404 58.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 3.5e-107 392.9 425 55.3
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.3e-106 391.0 391 67.3
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-106 390.2 404 57.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 8.6e-106 388.3 426 58.0
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.9e-105 387.1 369 61.8
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 3.3e-105 386.3 391 66.2
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 8.1e-104 381.7 450 48.4
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 5.2e-103 379.0 434 53.2
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 7.5e-102 375.2 390 56.4
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.2e-99 367.9 410 53.9
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.3e-98 363.6 298 80.5
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-93 347.1 404 52.0
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 6.0e-91 339.0 335 63.3
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.6e-88 330.9 387 51.7
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 6.2e-88 328.9 366 56.6
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 2.6e-86 323.6 256 80.5
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 6.6e-82 308.9 395 46.6
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.9e-77 292.7 293 79.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 8.4e-77 292.0 387 43.9
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.1e-76 291.6 416 48.3
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 7.4e-73 278.9 198 66.7
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 9.0e-71 271.9 254 64.6
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 1.1e-68 265.0 398 42.7
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.8e-63 247.7 251 59.4
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 4.0e-63 246.5 394 48.2
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.6e-62 243.8 251 59.0
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 7.6e-62 242.3 194 61.9
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.0e-50 205.3 101 92.1
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.8e-50 204.5 125 78.4
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.5e-49 201.4 299 41.1
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 4.8e-48 196.4 299 40.8
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.3e-47 193.0 101 86.1
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.7e-45 188.0 89 95.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 5.0e-45 186.4 88 96.6
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.7e-40 170.2 398 36.7
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.5e-33 148.3 184 48.4
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 4.4e-33 146.7 102 63.7
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 3.7e-32 143.7 95 72.6
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.8e-31 141.4 146 55.5
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 9.1e-31 139.0 95 71.6
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.1e-27 127.9 299 38.5
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 4.7e-27 126.7 81 74.1
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 6.8e-26 122.9 81 71.6
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 3.4e-25 120.6 58 89.7
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 4.5e-22 110.2 70 72.9
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.0e-21 109.0 78 65.4
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.2e-20 103.6 50 84.0
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.0e-18 97.1 63 69.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 4.4e-17 93.6 44 93.2
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 7.5e-17 92.8 67 61.2
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 2.8e-16 90.9 120 62.5
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.8e-16 90.9 43 93.0
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.4e-15 88.6 45 82.2
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.8e-15 88.2 45 86.7
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 4.1e-15 87.0 41 97.6
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 4.1e-15 87.0 41 97.6
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.1e-15 85.9 43 86.0
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 6.6e-13 79.7 164 31.1
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 6.6e-13 79.7 45 80.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 2.1e-11 74.7 38 81.6
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 4.0e-10 70.5 47 57.4
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.2e-09 68.9 40 75.0
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.2e-08 64.7 83 41.0
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.0e-06 58.2 40 65.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 7.8e-06 56.2 72 37.5


User provided reference genes

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