Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 6.4e-35 150.2 77 100.0
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.9e-34 148.7 77 98.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.8e-30 134.8 77 89.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.4e-29 131.7 77 87.0
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 2.4e-29 131.7 76 86.8
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 5.3e-29 130.6 77 87.0
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 5.3e-29 130.6 77 87.0
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.9e-29 130.2 77 87.0
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 6.9e-29 130.2 77 87.0
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 6.9e-29 130.2 77 84.4
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 6.9e-29 130.2 77 87.0
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 6.9e-29 130.2 77 87.0
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.0e-29 129.8 77 85.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 9.0e-29 129.8 77 87.0
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 9.0e-29 129.8 77 87.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 9.0e-29 129.8 77 87.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.2e-28 129.4 77 87.0
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.6e-28 128.3 77 87.0
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.6e-28 128.3 77 84.4
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.6e-28 128.3 77 84.4
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 4.5e-28 127.5 77 85.7
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 5.8e-28 127.1 77 84.4
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 7.6e-28 126.7 77 85.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.0e-27 126.3 77 84.4
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.3e-27 125.9 77 81.8
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.3e-27 125.9 77 81.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.2e-27 125.2 77 85.7
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.2e-27 125.2 77 83.1
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.2e-27 125.2 77 83.1
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.9e-27 124.8 77 80.5
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 6.5e-27 123.6 77 84.4
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 6.5e-27 123.6 77 80.5
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.1e-26 122.9 77 79.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.9e-26 122.1 77 81.8
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.5e-26 121.7 77 79.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.2e-26 121.3 77 81.8
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.2e-26 121.3 77 80.5
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.2e-26 121.3 77 81.8
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 3.2e-26 121.3 77 80.5
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 5.5e-26 120.6 77 79.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 5.5e-26 120.6 77 80.5
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 7.1e-26 120.2 77 80.5
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.1e-26 120.2 77 81.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.1e-26 120.2 77 81.8
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 9.3e-26 119.8 77 81.8
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.2e-25 119.4 77 79.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.2e-25 119.4 77 77.9
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.6e-25 119.0 77 79.2
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.6e-25 119.0 77 77.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 2.1e-25 118.6 77 80.5
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.1e-25 118.6 77 79.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.1e-25 118.6 77 80.5
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.7e-25 118.2 77 77.9
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.7e-25 118.2 77 77.9
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.7e-25 118.2 77 77.9
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 4.6e-25 117.5 77 77.9
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 6.0e-25 117.1 77 77.9
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 7.9e-25 116.7 77 77.9
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.9e-25 116.7 77 77.9
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 7.9e-25 116.7 77 76.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.0e-24 116.3 77 77.9
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.0e-24 116.3 77 75.3
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.0e-24 116.3 77 75.3
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.0e-24 116.3 77 77.9
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.0e-24 116.3 77 77.9
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.3e-24 115.9 77 75.3
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.8e-24 115.5 77 77.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.8e-24 115.5 77 76.6
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.8e-24 115.5 77 79.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.3e-24 115.2 77 77.9
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 3.0e-24 114.8 77 76.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.9e-24 114.4 77 76.6
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.9e-24 114.4 77 75.3
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.9e-24 114.4 77 75.3
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 5.1e-24 114.0 77 74.0
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 6.7e-24 113.6 77 75.3
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 6.7e-24 113.6 78 79.5
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 6.7e-24 113.6 77 74.0
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 8.7e-24 113.2 77 74.0
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.1e-23 112.8 77 72.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.1e-23 112.8 77 72.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.5e-23 112.5 77 71.4
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-23 112.5 77 75.3
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.5e-23 112.5 77 75.3
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.5e-23 112.5 69 82.6
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-23 112.1 77 75.3
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.9e-23 112.1 70 82.9
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.9e-23 112.1 77 75.3
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.5e-23 111.7 77 75.3
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 3.3e-23 111.3 77 74.0
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.3e-23 111.3 77 75.3
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 4.3e-23 110.9 77 72.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 4.3e-23 110.9 77 74.0
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 4.3e-23 110.9 77 74.0
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.3e-23 110.9 77 71.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 5.7e-23 110.5 77 74.0
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 5.7e-23 110.5 77 74.0
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.7e-23 110.5 77 71.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 7.4e-23 110.2 69 82.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 7.4e-23 110.2 77 72.7
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 9.6e-23 109.8 77 74.0
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 9.6e-23 109.8 77 74.0
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 9.6e-23 109.8 77 74.0
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 9.6e-23 109.8 77 71.4
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.3e-22 109.4 77 71.4
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.3e-22 109.4 77 72.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 74.0
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 72.7
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 72.7
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.6e-22 109.0 77 71.4
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 2.1e-22 108.6 78 76.9
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.8e-22 108.2 77 72.7
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 4.8e-22 107.5 77 72.7
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.3e-22 107.1 77 71.4
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 6.3e-22 107.1 77 70.1
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 8.2e-22 106.7 71 76.1
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-21 106.3 77 72.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.4e-21 105.1 77 66.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.0e-20 102.1 76 67.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.0e-20 102.1 77 64.9
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.4e-20 101.3 75 68.0
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 7.6e-20 100.1 77 62.3
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 8.5e-19 96.7 72 68.1
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.1e-18 96.3 77 62.3
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.0e-16 88.2 50 88.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.7e-16 87.0 77 54.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 6.7e-16 87.0 77 55.8
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.5e-15 85.9 78 53.8
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 4.3e-15 84.3 77 54.5
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 4.3e-15 84.3 77 54.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 9.7e-15 83.2 77 54.5
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-13 79.0 137 40.1
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.4e-13 78.6 46 82.6
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 6.9e-13 77.0 57 66.7
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 3.2e-10 68.2 46 76.1
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 3.9e-08 61.2 34 85.3
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 1.7e-06 55.8 40 75.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.2e-06 55.5 47 53.2
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.2e-06 55.5 43 65.1


User provided reference genes

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