Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 7.0e-110 400.6 198 100.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.0e-92 343.6 198 81.8
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 4.3e-91 338.2 198 81.3
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.4e-89 333.2 200 81.5
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.1e-89 332.0 198 80.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 4.0e-89 331.6 198 79.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.2e-88 330.1 198 78.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 7.6e-88 327.4 198 78.3
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 7.6e-88 327.4 198 78.3
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 9.9e-88 327.0 198 78.3
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 9.9e-88 327.0 198 77.8
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.3e-87 326.6 198 78.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.2e-87 325.9 198 79.3
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 4.9e-87 324.7 199 79.9
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 4.9e-87 324.7 198 78.3
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 4.9e-87 324.7 198 78.3
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 6.4e-87 324.3 198 78.8
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 8.4e-87 323.9 198 77.8
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.1e-86 323.6 198 77.8
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 2.4e-86 322.4 198 77.3
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.2e-86 322.0 198 76.3
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 4.2e-86 321.6 198 75.8
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.3e-86 320.5 198 76.8
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 9.3e-86 320.5 198 76.8
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.2e-85 320.1 198 76.3
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.1e-85 319.3 198 76.3
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 6.0e-85 317.8 198 75.3
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.0e-85 317.8 198 76.3
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 6.0e-85 317.8 198 75.8
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-84 316.6 198 74.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.3e-84 316.6 198 76.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.3e-84 316.6 198 77.3
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.7e-84 316.2 199 76.9
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 3.0e-84 315.5 198 74.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.9e-84 315.1 198 75.3
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 74.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 74.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 75.8
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 77.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.1e-84 314.7 198 77.8
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.1e-83 313.5 198 74.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.5e-83 313.2 198 73.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.5e-83 312.4 198 73.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.5e-83 312.4 198 72.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.3e-83 312.0 206 73.8
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.6e-83 310.5 206 73.3
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 71.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 75.8
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 74.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.1e-82 309.3 198 73.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.1e-82 309.3 200 73.5
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.8e-82 308.9 198 73.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 73.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 4.8e-82 308.1 198 73.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 73.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 73.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 72.2
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 72.7
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 72.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 73.7
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 71.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 72.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.0e-81 305.1 198 73.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 72.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 72.2
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-80 303.5 198 72.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.5e-80 303.1 241 64.3
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 70.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 73.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 72.7
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.4e-80 302.0 169 84.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 3.4e-80 302.0 198 71.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 5.8e-80 301.2 198 71.7
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 72.2
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 72.7
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.4e-79 297.7 234 63.7
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 70.7
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 8.4e-79 297.4 234 63.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 69.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.1e-78 297.0 217 68.7
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 68.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 69.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 70.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 68.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 68.2
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.7e-77 292.4 233 62.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 68.7
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 6.0e-77 291.2 253 59.3
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.3e-76 290.0 216 65.7
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.3e-76 290.0 236 61.4
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.0e-76 288.9 219 64.8
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 8.7e-76 287.3 169 81.7
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 66.7
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 9.6e-75 283.9 188 73.9
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.3e-74 283.5 171 77.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.2e-74 281.2 198 67.2
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.4e-73 280.0 173 76.3
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 4.9e-71 271.6 198 65.7
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 8.4e-71 270.8 180 71.7
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.0e-68 263.8 191 66.5
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.3e-67 258.5 198 66.7
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.1e-66 256.1 155 76.8
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 4.8e-66 255.0 167 74.9
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 8.1e-66 254.2 198 61.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-65 253.8 169 68.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 7.6e-64 247.7 198 57.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 8.4e-63 244.2 159 71.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.2e-62 241.9 198 61.1
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 9.0e-57 224.2 145 71.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.5e-56 223.4 198 50.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 3.4e-56 222.2 135 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 2.2e-55 219.5 198 49.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.9e-51 206.5 191 47.6
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 5.7e-51 204.9 191 48.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 8.5e-47 191.0 143 65.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.1e-46 190.7 185 56.2
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 9.4e-46 187.6 115 72.2
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 7.9e-45 184.5 133 60.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.8e-44 183.3 160 52.5
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.9e-44 182.2 130 66.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 3.3e-43 179.1 115 72.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.3e-43 178.7 130 60.8
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 7.4e-43 177.9 110 82.7
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 3.7e-42 175.6 120 62.5
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 6.9e-41 171.4 142 57.0
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.8e-36 156.8 143 53.1
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 7.4e-35 151.4 115 55.7
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.8e-34 149.4 77 98.7
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.7e-34 149.1 115 54.8
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-30 137.5 86 64.0
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.2e-29 134.0 97 72.2
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 6.1e-29 131.7 115 58.3
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 8.0e-29 131.3 77 88.3
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.4e-28 130.6 77 87.0
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.8e-28 130.2 145 42.1
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.5e-27 127.1 75 85.3
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 3.3e-27 125.9 77 80.5
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 9.7e-27 124.4 77 81.8
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.1e-25 119.4 77 76.6
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.1e-25 119.4 77 76.6
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 72.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.9e-23 112.8 69 84.1
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.5e-22 109.8 78 66.7
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-20 104.0 75 69.3
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.0e-20 102.4 81 63.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 4.0e-20 102.4 57 75.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.6e-19 99.8 72 69.4
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 8.3e-18 94.7 55 72.7
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.8e-17 93.6 99 43.4
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-17 93.6 145 42.8
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 7.0e-17 91.7 65 69.2
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 3.5e-16 89.4 191 27.7
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.1e-14 84.3 55 60.0
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 9.4e-14 81.3 64 57.8
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 3.6e-13 79.3 63 50.8
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 6.1e-13 78.6 119 37.8
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 5.2e-12 75.5 56 60.7
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.6e-11 73.2 56 58.9
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 9.8e-11 71.2 46 78.3
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.3e-10 70.9 48 62.5
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.4e-09 67.4 51 60.8
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.7e-08 63.2 51 54.9
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.9e-08 62.0 45 68.9
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 1.9e-06 57.0 36 52.8
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 3.3e-06 56.2 40 75.0


User provided reference genes

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