Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 4.1e-70 268.1 148 100.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 6.5e-60 234.2 148 83.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.6e-58 229.6 148 82.4
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 4.7e-58 228.0 148 82.4
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.0e-57 224.9 148 80.4
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 5.2e-57 224.6 148 81.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-56 223.0 148 79.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.5e-56 223.0 148 79.7
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.6e-56 222.2 148 79.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.3e-55 219.9 148 78.4
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.7e-55 219.5 148 78.4
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-55 219.2 148 79.1
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 3.7e-55 218.4 148 76.4
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.1e-54 216.9 148 77.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.4e-54 215.7 148 75.7
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 7.0e-54 214.2 148 76.4
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.2e-53 213.4 147 76.9
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 7.7e-53 210.7 148 74.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.0e-52 210.3 148 73.6
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.3e-52 209.9 148 73.6
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.3e-52 209.9 148 77.0
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 75.7
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 73.6
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.9e-52 208.8 148 75.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.9e-52 208.8 148 75.7
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.5e-51 206.5 148 73.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.2e-51 204.9 148 73.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.0
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 9.4e-51 203.8 148 71.6
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.4e-49 199.9 144 72.9
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.8e-49 199.5 145 74.5
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.3e-49 199.1 144 72.2
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.6e-48 195.7 148 70.9
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.4e-48 195.3 143 73.4
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.4e-48 195.3 143 72.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 7.5e-48 194.1 148 70.9
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 7.5e-48 194.1 148 67.6
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.2e-47 192.6 148 71.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.8e-47 192.2 143 70.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 70.3
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.8e-46 189.5 150 72.0
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 69.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 69.6
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 7.0e-46 187.6 152 68.4
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.6e-45 186.4 148 65.5
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.5e-45 184.9 150 66.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 7.7e-45 184.1 143 71.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.0e-44 183.7 150 68.7
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.8e-44 181.8 150 66.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.1e-43 180.3 150 64.7
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.1e-42 176.0 149 65.8
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.1e-42 176.0 149 65.8
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.7e-42 174.9 149 65.1
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.7e-42 174.9 148 70.3
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.0e-41 173.7 140 65.0
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 1.0e-41 173.7 142 66.2
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 3.0e-41 172.2 150 63.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 5.2e-41 171.4 144 64.6
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 6.8e-41 171.0 152 64.5
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.5e-40 169.9 148 64.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.5e-40 169.9 150 62.0
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.6e-40 169.1 148 64.2
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.4e-40 168.7 152 64.5
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 7.5e-40 167.5 120 75.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 7.5e-40 167.5 151 62.9
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-39 166.8 119 73.9
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.3e-39 166.8 155 63.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-39 166.4 121 72.7
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.2e-39 166.0 119 73.9
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 2.2e-39 166.0 151 62.9
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-39 165.6 119 73.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-39 165.6 119 73.9
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.7e-39 165.2 144 64.6
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 3.7e-39 165.2 132 68.9
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 6.3e-39 164.5 151 62.3
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.1e-38 161.8 138 62.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 9.2e-38 160.6 148 60.1
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 148 59.5
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.0e-36 157.1 142 62.7
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-36 156.4 114 72.8
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 5.0e-36 154.8 121 71.9
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-35 153.7 114 71.9
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 2.5e-35 152.5 149 59.7
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.3e-35 152.1 148 59.5
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 9.5e-35 150.6 118 67.8
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.6e-34 149.8 150 58.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.6e-34 149.8 148 56.8
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.6e-34 148.7 123 66.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 56.8
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 3.6e-34 148.7 148 57.4
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 56.1
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 55.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 55.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 55.4
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.0e-33 147.1 148 56.8
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.4e-33 146.7 150 56.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.4e-33 146.7 138 62.3
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.8e-33 146.4 148 55.4
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.3e-33 146.0 149 53.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 54.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 54.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 6.8e-33 144.4 112 67.9
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 55.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 57.4
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 5.8e-32 141.4 111 67.6
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 56.1
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.3e-31 140.2 149 57.7
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 2.9e-31 139.0 151 54.3
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.9e-31 138.3 141 50.4
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.0e-29 132.9 150 52.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.0e-29 132.9 150 52.0
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.7e-28 129.8 119 57.1
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 54.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.5e-27 125.9 149 53.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.6e-27 124.8 125 56.8
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 4.7e-26 121.7 148 45.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.4e-22 108.2 79 68.4
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.0e-20 104.0 75 74.7
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.5e-19 99.4 103 59.2
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 7.3e-19 97.8 119 51.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.6e-18 95.5 103 57.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.2e-15 86.3 89 56.2
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.4e-14 83.6 73 64.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.4e-14 83.6 89 52.8
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.2e-14 80.9 69 65.2
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.6e-13 80.1 92 56.5
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 8.6e-12 74.3 59 62.7
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 8.6e-12 74.3 62 61.3
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 7.3e-11 71.2 92 52.2
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-09 66.6 132 43.9
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.8e-09 66.6 132 43.9
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 3.4e-08 62.4 136 32.4
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 5.8e-08 61.6 90 50.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 1.3e-07 60.5 130 31.5
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-07 59.7 97 48.5


User provided reference genes

Program Settings