Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 0.0e+00 1275.8 672 100.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.0e-289 998.8 675 79.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.9e-288 994.2 695 78.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 6.4e-288 993.8 672 78.9
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.7e-286 988.4 675 77.0
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.7e-285 985.7 677 79.0
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.9e-284 982.2 675 78.7
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.9e-284 982.2 675 78.7
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.5e-284 979.9 675 77.8
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 6.2e-283 977.2 678 78.6
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.1e-282 974.9 674 78.3
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.6e-281 971.8 674 77.7
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 5.4e-279 964.1 702 72.2
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 6.0e-278 960.7 676 76.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.0e-277 958.4 673 76.8
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.9e-276 955.7 673 77.1
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 4.7e-275 951.0 674 77.7
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.4e-274 948.7 678 76.7
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.6e-273 943.7 639 79.5
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.9e-269 931.4 672 77.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 8.7e-269 930.2 676 76.2
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.9e-268 929.1 676 76.3
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 5.6e-268 927.5 632 78.8
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 9.6e-268 926.8 684 74.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 9.6e-268 926.8 673 75.3
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.5e-265 919.5 673 76.2
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.5e-265 919.5 677 75.0
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.4e-265 918.3 678 74.5
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.6e-262 909.4 680 74.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.1e-262 909.1 732 70.4
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.7e-261 903.7 675 73.5
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.2e-256 889.0 663 74.7
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.4e-255 885.6 669 74.0
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.2e-255 884.8 622 77.7
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 9.3e-255 883.6 675 72.0
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.6e-254 881.3 645 74.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 6.0e-254 880.9 675 73.9
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.3e-253 879.0 607 78.6
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.1e-252 876.7 675 69.8
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 3.3e-252 875.2 677 72.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.3e-252 875.2 671 73.5
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 4.8e-251 871.3 676 73.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.3e-250 867.8 678 71.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.0e-249 865.9 664 72.6
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.2e-248 862.4 798 64.0
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.4e-248 860.5 638 73.8
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 4.2e-247 858.2 675 71.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.2e-246 856.7 674 73.3
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 4.6e-246 854.7 676 72.5
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 3.0e-245 852.0 660 72.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.7e-245 850.9 689 69.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 2.5e-244 849.0 671 70.0
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 2.4e-242 842.4 622 75.1
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 3.1e-242 842.0 685 69.8
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.6e-241 839.0 685 69.2
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.1e-238 829.3 669 67.6
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.3e-235 820.1 676 68.3
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 3.7e-235 818.5 674 68.4
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 6.5e-232 807.7 676 68.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 1.2e-230 803.5 655 69.0
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.7e-230 802.4 640 69.7
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 6.1e-230 801.2 644 69.3
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 8.2e-227 790.8 555 79.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 6.5e-224 781.2 592 74.7
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 6.1e-222 774.6 605 73.4
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.0e-221 772.3 677 67.4
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 4.4e-220 768.5 683 65.4
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 4.8e-219 765.0 678 63.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 8.2e-219 764.2 678 65.3
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.1e-218 762.3 738 59.3
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 5.3e-218 761.5 667 66.1
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 9.1e-218 760.8 668 66.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 9.4e-215 750.7 674 64.1
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 8.0e-214 747.7 671 64.7
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-213 746.1 666 65.3
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.3e-213 746.1 666 65.3
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.3e-213 746.1 666 65.5
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 4.0e-213 745.3 673 64.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 4.0e-213 745.3 668 65.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.3e-212 742.3 543 76.1
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 4.1e-210 735.3 672 63.5
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 4.1e-210 735.3 672 63.5
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-209 733.8 672 63.4
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.0e-208 730.7 697 62.1
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-208 729.9 666 64.1
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.7e-208 729.9 666 64.1
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 3.2e-207 725.7 525 75.2
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.7e-206 722.6 693 62.2
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.7e-206 722.6 656 64.9
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 5.7e-196 688.3 677 57.2
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 2.2e-195 686.4 496 76.2
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 4.5e-193 678.7 625 63.7
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.5e-193 678.7 605 63.0
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.0e-192 677.6 668 57.6
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 9.5e-191 671.0 451 79.4
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 8.0e-190 667.9 670 60.0
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 7.0e-186 654.8 674 57.6
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.5e-183 647.1 619 60.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 4.3e-183 645.6 606 63.0
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 7.3e-183 644.8 715 53.0
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 8.9e-181 637.9 676 58.3
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.8e-174 616.3 672 55.7
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.3e-168 596.7 466 66.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.3e-167 592.4 412 79.6
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.3e-165 586.6 672 54.3
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.9e-163 579.7 655 56.2
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.8e-155 552.7 614 52.4
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 4.6e-145 519.2 443 67.9
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 9.0e-141 505.0 676 47.2
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 3.2e-138 496.5 631 48.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 5.8e-132 475.7 632 48.3
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.2e-131 473.8 503 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.9e-119 434.1 559 47.9
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.1e-109 401.7 689 42.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 4.1e-109 399.8 312 77.6
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 7.4e-103 379.0 284 81.3
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.2e-99 367.5 557 45.6
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 5.4e-77 293.1 314 60.8
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-76 291.2 474 40.5
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-70 271.9 182 87.4
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.7e-67 261.5 309 58.6
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.0e-67 260.0 200 66.0
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.3e-66 256.1 333 42.9
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-62 245.0 321 43.9
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 8.6e-59 232.6 229 68.6
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.9e-56 222.6 289 42.9
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.4e-55 220.7 297 52.9
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 1.4e-53 215.3 286 51.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-51 208.8 167 65.9
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.0e-51 207.6 199 73.4
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.8e-46 190.7 208 50.0
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 3.2e-45 187.6 159 66.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.5e-42 177.9 103 93.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 5.4e-37 160.2 81 91.4
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 6.9e-32 143.3 275 35.3
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.5e-23 114.0 127 43.3
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.9e-21 108.6 59 86.4
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.2e-21 107.8 114 56.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.6e-20 105.5 310 28.1
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-19 102.4 91 49.5
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.3e-19 102.4 91 49.5
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.9e-18 98.6 73 64.4
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 1.9e-18 98.6 174 33.9
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 2.8e-17 94.7 104 54.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 9.0e-16 89.7 68 61.8
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 8.4e-14 83.2 51 78.4
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 4.6e-12 77.4 53 66.0
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.5e-10 72.4 146 30.8
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.4e-10 70.1 62 59.7
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.4e-10 70.1 62 59.7
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 9.7e-10 69.7 134 34.3
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 5.3e-08 63.9 60 61.7
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 2.2e-06 58.5 35 71.4
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 5.0e-06 57.4 58 51.7


User provided reference genes

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