Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 5.9e-73 277.3 131 100.0
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 4.9e-67 257.7 131 93.9
Manes.10G121200 Manihot esculenta HOM05D009888 ORTHO05D001895 1.2e-52 209.9 131 80.2
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 2.6e-44 182.2 131 65.6
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 5.4e-42 174.5 122 67.2
Potri.003G016733 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.9e-39 166.0 133 59.4
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 9.6e-39 163.7 133 59.4
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 2.1e-38 162.5 131 58.0
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.1e-37 160.2 132 58.3
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 2.4e-37 159.1 134 58.2
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 2.0e-36 156.0 131 55.7
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 5.8e-36 154.5 128 59.4
Sabra03G0007700 Salix brachista HOM05D009888 ORTHO05D001895 5.8e-36 154.5 132 55.3
Potri.003G013601 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.4e-34 149.8 133 55.6
Sabra03G0006900 Salix brachista HOM05D009888 ORTHO05D001895 1.2e-33 146.7 132 55.3
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 1.3e-32 143.3 132 53.8
Sabra03G0007000 Salix brachista HOM05D009888 ORTHO05D001895 3.3e-31 138.7 128 54.7
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 1.3e-30 136.7 134 52.2
Sabra03G0007200 Salix brachista HOM05D009888 ORTHO05D001895 6.2e-30 134.4 128 53.1
Manes.02G167801 Manihot esculenta HOM05D009888 ORTHO05D001895 4.8e-22 108.2 124 43.5
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.2e-22 107.8 122 45.1
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-20 102.4 123 41.5
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.8e-19 98.6 117 45.3
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-18 95.5 118 40.7
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.1e-18 94.4 115 41.7
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 7.1e-18 94.4 127 37.8
Thecc.02G091100 Theobroma cacao HOM05D002599 ORTHO05D001895 9.3e-18 94.0 128 42.2
Gohir.D13G034950 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-17 92.0 130 44.6
Sabra03G0006400 Salix brachista HOM05D002599 ORTHO05D001895 3.5e-17 92.0 120 43.3
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.6e-17 91.7 118 43.2
Gohir.A13G036650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.9e-17 90.9 136 42.6
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.0e-16 90.5 117 37.6
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-16 89.4 103 42.7
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.3e-16 89.4 124 38.7
Gorai.013G039500 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-16 89.0 133 43.6
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 3.0e-16 89.0 125 37.6
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-16 89.0 121 41.3
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-16 88.6 116 37.9
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-16 88.6 116 37.9
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-16 88.6 116 37.9
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-16 88.6 119 42.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.1e-16 88.2 121 40.5
Potri.011G005300 Populus trichocarpa HOM05D008886 ORTHO05D001895 5.1e-16 88.2 123 39.8
Sabra03G0006100 Salix brachista HOM05D002599 ORTHO05D001895 5.1e-16 88.2 116 43.1
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.7e-16 87.8 118 39.8
Manes.07G020700 Manihot esculenta HOM05D016843 ORTHO05D001895 6.7e-16 87.8 121 38.0
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 6.7e-16 87.8 124 40.3
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.7e-16 87.4 118 38.1
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.7e-16 87.4 117 35.9
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-15 86.7 110 39.1
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 1.5e-15 86.7 124 39.5
Sabra07G0096600 Salix brachista HOM05D000527 ORTHO05D017379 2.5e-15 85.9 105 38.1
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-15 85.5 118 39.0
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 3.3e-15 85.5 121 37.2
Sabra07G0096500 Salix brachista HOM05D008886 ORTHO05D001895 3.3e-15 85.5 105 39.0
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.7e-15 84.7 132 33.3
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.6e-15 84.0 114 41.2
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 1.3e-14 83.6 119 42.9
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.1e-14 82.8 121 40.5
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 2.8e-14 82.4 121 36.4
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 3.7e-14 82.0 105 39.0
Potri.011G005601 Populus trichocarpa HOM05D008886 ORTHO05D001895 6.3e-14 81.3 123 38.2
Sabra11G0004000 Salix brachista HOM05D008886 ORTHO05D001895 8.2e-14 80.9 123 39.8
Sabra11G0004600 Salix brachista HOM05D008886 ORTHO05D001895 8.2e-14 80.9 123 39.8
Potri.011G006050 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.4e-13 80.1 122 34.4
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.8e-13 79.7 115 38.3
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.4e-13 79.3 118 39.0
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-13 79.0 109 38.5
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-13 78.6 110 37.3
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.1e-13 78.6 110 37.3
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 4.1e-13 78.6 117 38.5
Sabra11G0004100 Salix brachista HOM05D008886 ORTHO05D001895 4.1e-13 78.6 123 39.8
Sabra11G0004700 Salix brachista HOM05D008886 ORTHO05D001895 4.1e-13 78.6 127 38.6
Sabra11G0005000 Salix brachista HOM05D008886 ORTHO05D001895 4.1e-13 78.6 127 38.6
Sabra07G0096900 Salix brachista HOM05D008886 ORTHO05D001895 9.0e-13 77.4 105 36.2
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-12 77.0 114 34.2
Sabra11G0004400 Salix brachista HOM05D008886 ORTHO05D001895 1.2e-12 77.0 123 38.2
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 2.0e-12 76.3 102 39.2
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-12 76.3 115 40.9
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-12 76.3 118 34.7
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-12 75.9 125 32.8
Atru.chr6.1076 Acer truncatum HOM05D008886 ORTHO05D001895 3.4e-12 75.5 130 33.8
Sabra11G0005100 Salix brachista HOM05D008886 ORTHO05D001895 3.4e-12 75.5 123 37.4
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.5e-12 75.1 114 32.5
Sabra11G0005300 Salix brachista HOM05D008886 ORTHO05D001895 4.5e-12 75.1 124 38.7
Sabra11G0005400 Salix brachista HOM05D008886 ORTHO05D001895 5.9e-12 74.7 123 37.4
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.6e-12 74.3 104 39.4
Sabra11G0004200 Salix brachista HOM05D008886 ORTHO05D001895 7.6e-12 74.3 123 38.2
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-11 73.9 114 37.7
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-11 73.9 109 39.4
Sabra11G0004500 Salix brachista HOM05D008886 ORTHO05D001895 1.3e-11 73.6 123 38.2
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-11 73.2 125 32.8
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.7e-11 73.2 125 32.8
Sabra01G0166800 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-11 73.2 112 36.6
Sabra07G0097000 Salix brachista HOM05D000527 ORTHO05D017379 1.7e-11 73.2 112 34.8
Sabra11G0004900 Salix brachista HOM05D008886 ORTHO05D001895 1.7e-11 73.2 123 37.4
Thecc.07G108300 Theobroma cacao HOM05D009888 ORTHO05D001895 1.7e-11 73.2 115 31.3
Sabra11G0005500 Salix brachista HOM05D008886 ORTHO05D001895 2.2e-11 72.8 107 38.3
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-11 72.8 96 40.6
Potri.011G005500 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.9e-11 72.4 126 34.1
Manes.07G017350 Manihot esculenta HOM05D016843 ORTHO05D001895 3.8e-11 72.0 121 31.4
Sabra11G0004300 Salix brachista HOM05D008886 ORTHO05D001895 3.8e-11 72.0 123 37.4
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-11 71.2 113 36.3
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-11 71.2 114 32.5
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.5e-11 71.2 114 32.5
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.4e-11 70.9 111 37.8
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 8.4e-11 70.9 117 33.3
COL.COLO4_17587 Corchorus olitorius HOM05D009888 ORTHO05D001895 1.1e-10 70.5 111 33.3
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-10 70.5 116 35.3
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-10 70.5 105 37.1
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-10 70.1 115 38.3
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-10 70.1 119 35.3
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-10 69.7 115 38.3
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-10 69.3 110 38.2
Atru.chr6.323 Acer truncatum HOM05D002599 ORTHO05D001895 3.2e-10 68.9 95 37.9
Atru.chr3.612 Acer truncatum HOM05D002599 ORTHO05D001895 4.2e-10 68.6 108 36.1
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 4.2e-10 68.6 119 34.5
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-10 68.6 113 34.5
Atru.chr3.613 Acer truncatum HOM05D002599 ORTHO05D001895 5.5e-10 68.2 106 35.8
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-10 68.2 116 35.3
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-10 68.2 114 38.6
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 5.5e-10 68.2 119 34.5
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 5.5e-10 68.2 119 34.5
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 5.5e-10 68.2 119 34.5
Potri.011G004900 Populus trichocarpa HOM05D008886 ORTHO05D001895 7.2e-10 67.8 126 30.2
Thecc.07G108200 Theobroma cacao HOM05D009888 ORTHO05D001895 7.2e-10 67.8 114 29.8
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.3e-10 67.4 110 38.2
Sabra01G0167400 Salix brachista HOM05D008886 ORTHO05D001895 9.3e-10 67.4 91 42.9
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 1.2e-09 67.0 104 28.8
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-09 67.0 117 35.0
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 1.6e-09 66.6 84 44.0
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-09 66.2 111 36.0
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.1e-09 66.2 104 28.8
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.1e-09 66.2 116 31.9
Manes.10G124912 Manihot esculenta HOM05D002599 ORTHO05D001895 2.7e-09 65.9 114 31.6
Sabra07G0096300 Salix brachista HOM05D001043 ORTHO05D001895 2.7e-09 65.9 84 36.9
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.7e-09 65.9 117 36.8
Potri.004G010850 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.5e-09 65.5 102 33.3
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.5e-09 65.5 115 34.8
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.1e-09 64.7 116 37.1
Prupe.1G574200 Prunus persica HOM05D002599 ORTHO05D001895 7.9e-09 64.3 119 32.8
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.3e-08 63.5 110 36.4
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.3e-08 63.5 120 31.7
Sabra07G0096700 Salix brachista HOM05D008886 ORTHO05D001895 1.3e-08 63.5 98 33.7
Potri.011G005400 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.8e-08 63.2 124 29.8
Ciclev10003864m.g Citrus clementina HOM05D022543 ORTHO05D001895 2.3e-08 62.8 99 33.3
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 3.0e-08 62.4 102 30.4
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 3.0e-08 62.4 103 30.1
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 3.0e-08 62.4 111 35.1
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.9e-08 62.0 86 36.0
Sabra16G0269300 Salix brachista HOM05D008886 ORTHO05D001895 6.7e-08 61.2 91 38.5
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-07 60.5 119 33.6
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-07 59.7 110 34.5
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.5e-07 59.3 110 34.5
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 3.3e-07 58.9 97 35.1
Sabra16G0267500 Salix brachista HOM05D008886 ORTHO05D001895 3.3e-07 58.9 82 36.6
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.7e-07 58.2 112 32.1
EL10Ac5g12341 Beta vulgaris HOM05D035930 ORTHO05D001895 1.3e-06 57.0 107 34.6
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-06 57.0 107 29.0
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.8e-06 55.1 90 35.6
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.8e-06 55.1 112 30.4
Lj1C187G5 Lonicera japonica HOM05D000112 ORTHO05D006442 4.8e-06 55.1 121 34.7


User provided reference genes

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