Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 5.1e-63 244.2 120 100.0
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 5.1e-39 164.5 119 65.5
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 5.3e-36 154.5 120 61.7
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 7.0e-36 154.1 120 61.7
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 7.0e-36 154.1 120 61.7
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 8.5e-34 147.1 119 56.3
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 1.1e-33 146.7 119 56.3
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 4.2e-33 144.8 120 60.8
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 9.4e-33 143.7 120 60.0
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.6e-32 142.9 119 56.3
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.1e-30 136.7 111 60.4
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 3.3e-30 135.2 118 55.1
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 6.3e-29 131.0 118 54.2
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 1.1e-28 130.2 117 53.8
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 3.1e-28 128.6 116 52.6
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 2.6e-27 125.6 120 50.8
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 1.7e-26 122.9 118 50.0
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 3.3e-22 108.6 118 44.1
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 6.3e-21 104.4 88 52.3
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 7.7e-19 97.4 119 41.2
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 7.7e-19 97.4 117 43.6
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.5e-18 94.4 117 42.7
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 3.2e-17 92.0 118 40.7
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-17 91.7 117 41.0
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 9.4e-17 90.5 115 40.9
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-16 90.1 114 42.1
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-16 88.2 120 40.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.7e-16 88.2 120 40.0
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.0e-15 87.0 117 38.5
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 5.2e-15 84.7 116 40.5
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.8e-15 84.3 119 37.0
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 6.8e-15 84.3 119 37.0
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.8e-15 84.3 116 37.1
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.8e-15 84.3 111 40.5
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.8e-15 84.0 120 39.2
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 8.8e-15 84.0 119 35.3
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 8.8e-15 84.0 115 36.5
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-15 84.0 118 44.1
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.5e-14 83.2 116 36.2
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.0e-14 82.8 121 38.8
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.6e-14 82.4 116 36.2
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-14 82.0 119 33.6
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-14 81.6 116 35.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-14 81.6 116 36.2
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.4e-14 81.6 116 35.3
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 5.7e-14 81.3 117 37.6
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.5e-14 80.9 121 40.5
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 7.5e-14 80.9 120 36.7
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 7.5e-14 80.9 116 36.2
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 9.8e-14 80.5 120 36.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-13 79.7 120 36.7
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.7e-13 79.7 116 35.3
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-13 79.3 124 38.7
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-13 79.0 118 37.3
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.7e-13 78.6 119 36.1
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.7e-13 78.6 114 36.8
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.8e-13 78.2 114 36.8
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 4.8e-13 78.2 116 37.1
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-12 77.0 116 37.1
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-12 77.0 117 35.0
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-12 77.0 109 37.6
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-12 76.6 116 38.8
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-12 76.3 119 36.1
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-12 76.3 110 38.2
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-12 76.3 119 31.9
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.4e-12 75.9 115 33.9
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 3.1e-12 75.5 114 37.7
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.4e-12 74.7 121 39.7
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.0e-12 74.3 108 37.0
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.0e-12 74.3 109 38.5
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.1e-12 73.9 116 33.6
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.1e-12 73.9 113 34.5
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.2e-11 73.6 90 41.1
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-11 73.2 117 33.3
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.7e-11 72.4 120 31.7
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.5e-11 72.0 90 36.7
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.5e-11 72.0 90 40.0
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.5e-11 72.0 120 31.7
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 4.5e-11 71.6 95 38.9
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.9e-11 71.2 116 33.6
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 5.9e-11 71.2 90 37.8
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.7e-11 70.9 119 37.0
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-10 70.5 123 36.6
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 1.3e-10 70.1 118 33.1
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-10 70.1 90 36.7
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-10 70.1 109 34.9
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-10 69.7 123 36.6
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-10 69.7 122 36.1
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.7e-10 69.7 122 33.6
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-10 69.3 116 32.8
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 2.9e-10 68.9 117 37.6
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.9e-10 68.9 109 33.9
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 2.9e-10 68.9 109 35.8
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 2.9e-10 68.9 117 33.3
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-10 68.2 122 35.2
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.0e-10 68.2 116 32.8
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 5.0e-10 68.2 120 34.2
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 5.0e-10 68.2 120 34.2
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.6e-10 67.8 116 33.6
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.6e-10 67.8 119 31.9
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 6.6e-10 67.8 117 34.2
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 6.6e-10 67.8 119 32.8
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.6e-10 67.4 121 36.4
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.6e-10 67.4 109 34.9
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 8.6e-10 67.4 117 34.2
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 8.6e-10 67.4 117 34.2
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 8.6e-10 67.4 117 34.2
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-09 67.0 110 32.7
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-09 67.0 108 34.3
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-09 66.6 109 33.0
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-09 66.2 122 34.4
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 66.2 116 31.0
Sabra03G0009200 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-09 66.2 116 31.0
Sabra03G0009800 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-09 66.2 116 31.0
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-09 66.2 118 33.1
Gorai.005G241200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.5e-09 65.9 123 35.0
Potri.004G010850 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.5e-09 65.9 113 27.4
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-09 65.9 112 34.8
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 2.5e-09 65.9 116 31.0
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.3e-09 65.5 90 35.6
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-09 65.5 115 30.4
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 3.3e-09 65.5 126 31.7
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.2e-09 65.1 118 32.2
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.2e-09 65.1 118 32.2
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.2e-09 65.1 122 33.6
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.2e-09 65.1 118 33.1
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.2e-09 65.1 118 32.2
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.2e-09 65.1 119 32.8
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-09 64.3 116 31.9
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 7.2e-09 64.3 113 31.0
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 7.2e-09 64.3 111 32.4
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.5e-09 63.9 104 33.7
Gorai.013G039500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-08 63.5 124 31.5
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-08 63.2 109 31.2
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-08 62.8 116 31.0
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-08 62.8 119 35.3
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.1e-08 62.8 120 36.7
Sabra03G0009500 Salix brachista HOM05D002599 ORTHO05D001895 2.1e-08 62.8 117 31.6
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.6e-08 62.0 116 30.2
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 6.1e-08 61.2 99 35.4
Gohir.D13G034950 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-08 61.2 124 30.6
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.0e-08 60.8 112 33.9
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 1.4e-07 60.1 105 26.7
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.3e-07 59.3 94 31.9
Gohir.D02G213400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-07 59.3 87 39.1
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.0e-07 58.5 112 33.9
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.2e-07 58.2 81 39.5
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 5.2e-07 58.2 106 35.8
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.8e-07 57.8 112 33.9
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.9e-07 57.4 81 39.5
Gohir.D02G213300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-06 57.0 87 36.8
Gorai.008G022300 Gossypium raimondii HOM05D008353 ORTHO05D218896 1.2e-06 57.0 118 33.1
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 1.2e-06 57.0 99 37.4
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-06 57.0 109 33.9
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 1.5e-06 56.6 102 36.3
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 81 37.0
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 112 32.1
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.5e-06 56.6 112 32.1
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 1.5e-06 56.6 123 35.8
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.6e-06 55.8 101 32.7
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.4e-06 55.5 118 27.1
Ah.12g052750 Amaranthus hybridus HOM05D002599 ORTHO05D001895 4.4e-06 55.1 54 48.1
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.4e-06 55.1 85 32.9
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.4e-06 55.1 115 31.3
Sabra07G0096600 Salix brachista HOM05D000527 ORTHO05D017379 4.4e-06 55.1 102 33.3
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-06 54.7 111 29.7
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 5.7e-06 54.7 99 36.4
Manes.07G020600 Manihot esculenta HOM05D008886 ORTHO05D001895 9.8e-06 53.9 109 30.3


User provided reference genes

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