Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 5.6e-65 250.8 123 100.0
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 1.1e-60 236.5 123 95.9
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 1.4e-44 183.0 123 70.7
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.2e-32 141.0 117 58.1
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.2e-32 140.6 117 58.1
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.2e-32 140.6 117 58.1
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.8e-31 139.4 115 58.3
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 9.0e-31 137.1 115 53.9
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 3.4e-30 135.2 118 55.1
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 7.6e-30 134.0 117 56.4
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 4.9e-29 131.3 117 55.6
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.6e-27 126.3 117 53.0
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 8.7e-26 120.6 119 49.6
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 8.7e-26 120.6 119 50.4
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 1.5e-22 109.8 117 48.7
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 2.0e-22 109.4 117 48.7
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 4.5e-22 108.2 118 46.6
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.7e-21 106.3 120 47.5
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 7.9e-19 97.4 118 45.8
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 3.0e-18 95.5 117 45.3
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.7e-16 89.7 118 41.5
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 2.8e-16 89.0 102 44.1
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-16 89.0 115 42.6
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.8e-16 89.0 115 42.6
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-15 86.7 113 38.9
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-15 86.3 116 42.2
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.4e-15 85.9 119 40.3
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.1e-15 85.5 120 40.8
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 6.9e-15 84.3 120 40.0
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 6.9e-15 84.3 113 38.9
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.1e-15 84.0 118 38.1
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.2e-14 83.6 121 38.8
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 1.2e-14 83.6 121 38.8
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-14 83.2 116 41.4
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-14 82.8 115 40.0
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-14 82.8 116 39.7
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.6e-14 82.4 116 39.7
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.4e-14 82.0 121 40.5
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.7e-14 80.9 114 38.6
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.7e-14 80.9 116 38.8
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-13 80.5 116 40.5
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.3e-13 80.1 110 37.3
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-13 79.3 109 40.4
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 2.9e-13 79.0 116 38.8
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.5e-13 77.8 120 36.7
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 8.5e-13 77.4 129 37.2
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-12 77.0 117 40.2
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.4e-12 76.6 107 40.2
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.9e-12 76.3 120 40.8
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.2e-12 75.5 121 38.8
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.2e-12 75.1 118 36.4
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.2e-12 75.1 118 34.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-12 75.1 114 40.4
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-12 74.7 108 34.3
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 7.2e-12 74.3 115 37.4
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.4e-12 73.9 117 38.5
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-11 73.2 115 38.3
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-11 73.2 111 34.2
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.1e-11 72.8 115 38.3
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-11 72.4 108 35.2
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-11 71.6 113 37.2
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-11 71.6 116 35.3
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 6.1e-11 71.2 102 38.2
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.1e-11 71.2 111 34.2
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.9e-11 70.9 114 36.0
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.9e-11 70.9 114 36.0
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.9e-11 70.9 114 36.0
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-10 70.5 109 35.8
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-10 70.5 111 39.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-10 70.1 115 33.0
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-10 70.1 121 36.4
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-10 70.1 121 36.4
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-10 69.7 114 35.1
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.3e-10 69.3 121 36.4
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.9e-10 68.6 114 34.2
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-10 68.6 118 33.9
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.9e-10 68.6 113 32.7
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.9e-10 68.6 113 31.9
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 5.1e-10 68.2 118 36.4
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.1e-10 68.2 114 35.1
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-10 67.8 114 33.3
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.7e-10 67.8 115 31.3
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.7e-10 67.8 109 35.8
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.7e-10 67.8 114 35.1
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 8.8e-10 67.4 113 37.2
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.1e-09 67.0 115 33.0
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-09 67.0 113 37.2
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-09 67.0 113 37.2
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.1e-09 67.0 114 34.2
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.1e-09 67.0 114 34.2
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-09 67.0 115 33.9
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-09 67.0 109 35.8
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-09 66.6 114 35.1
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-09 66.2 122 36.1
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 2.0e-09 66.2 118 33.1
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.6e-09 65.9 114 33.3
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.6e-09 65.9 114 33.3
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-09 65.9 109 33.9
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-09 65.9 110 33.6
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.7e-09 63.9 114 32.5
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.7e-09 63.9 114 32.5
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.7e-09 63.9 115 31.3
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-08 63.5 125 33.6
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-08 63.2 90 40.0
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-08 63.2 115 32.2
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-08 63.2 112 36.6
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-08 63.2 120 33.3
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 4.8e-08 61.6 113 32.7
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.8e-08 61.6 118 33.1
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-08 61.6 105 30.5
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.3e-08 61.2 117 33.3
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-08 60.8 111 35.1
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 8.2e-08 60.8 89 37.1
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-07 60.5 113 31.9
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.4e-07 60.1 116 36.2
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-07 59.7 113 32.7
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.8e-07 59.7 114 31.6
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-07 59.7 116 34.5
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-07 59.3 89 34.8
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 2.4e-07 59.3 126 33.3
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-07 59.3 116 33.6
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.1e-07 58.9 90 36.7
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-07 58.9 93 37.6
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-07 58.5 92 39.1
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-07 58.5 92 39.1
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.1e-07 58.5 114 30.7
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 5.3e-07 58.2 116 31.9
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.3e-07 58.2 110 35.5
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.3e-07 58.2 118 32.2
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 7.0e-07 57.8 91 36.3
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 7.0e-07 57.8 82 42.7
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 7.0e-07 57.8 119 32.8
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.1e-07 57.4 112 34.8
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.1e-07 57.4 115 34.8
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.1e-07 57.4 90 35.6
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 9.1e-07 57.4 93 40.9
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 9.1e-07 57.4 93 33.3
Sabra07G0096600 Salix brachista HOM05D000527 ORTHO05D017379 9.1e-07 57.4 89 38.2
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 9.1e-07 57.4 88 34.1
Gohir.D04G163166 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-06 57.0 89 33.7
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 1.2e-06 57.0 93 40.9
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 92 39.1
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.5e-06 56.6 113 31.0
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 110 34.5
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.5e-06 56.6 110 34.5
Gorai.012G151200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.5e-06 56.6 90 35.6
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-06 56.6 117 32.5
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-06 56.2 125 29.6
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 2.0e-06 56.2 127 33.1
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 2.0e-06 56.2 127 33.1
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-06 56.2 113 32.7
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 116 33.6
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 116 33.6
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 116 33.6
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 116 33.6
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 114 33.3
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.6e-06 55.8 114 29.8
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.6e-06 55.8 120 29.2
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.6e-06 55.8 120 28.3
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.4e-06 55.5 89 38.2
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-06 55.5 123 30.1
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.4e-06 55.5 123 30.1
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 3.4e-06 55.5 91 33.0
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.4e-06 55.5 115 30.4
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-06 55.5 119 30.3
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-06 55.5 88 34.1
Gorai.012G151100 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.5e-06 55.1 86 34.9
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.9e-06 54.7 116 31.9
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 5.9e-06 54.7 118 28.8
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.7e-06 54.3 119 30.3


User provided reference genes

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