Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 7.3e-65 250.4 123 100.0
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 6.4e-61 237.3 123 95.9
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 1.1e-44 183.3 123 70.7
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 3.9e-34 148.3 117 59.8
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 5.1e-34 147.9 117 59.8
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 5.1e-34 147.9 117 59.8
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.1e-33 146.7 115 60.0
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 1.1e-31 140.2 117 58.1
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.9e-31 137.5 115 53.9
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 6.9e-31 137.5 117 57.3
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 2.2e-29 132.5 117 54.7
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 3.8e-29 131.7 118 54.2
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 1.8e-26 122.9 119 49.6
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 1.8e-26 122.9 119 50.4
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 4.1e-23 111.7 117 48.7
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 5.3e-23 111.3 117 48.7
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 1.2e-22 110.2 118 46.6
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 4.5e-22 108.2 120 47.5
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 2.1e-19 99.4 118 45.8
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 3.9e-18 95.1 118 45.8
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 5.7e-17 91.3 118 41.5
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-16 89.7 116 42.2
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-16 89.4 113 38.1
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 1.1e-15 87.0 102 42.2
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-15 87.0 113 38.1
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.4e-15 86.7 119 40.3
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-15 86.7 116 41.4
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.8e-15 86.3 120 40.8
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.1e-15 85.5 118 37.3
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 4.1e-15 85.1 120 40.0
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.9e-15 84.3 121 38.8
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.9e-15 84.3 115 40.9
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.9e-15 84.3 116 38.8
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.9e-15 84.3 115 40.9
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 6.9e-15 84.3 121 38.8
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.1e-15 84.0 116 38.8
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-14 82.8 109 40.4
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-14 82.8 116 40.5
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.6e-14 82.4 121 38.0
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 2.6e-14 82.4 129 38.0
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.4e-14 82.0 114 37.7
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 5.9e-14 81.3 110 37.3
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 7.7e-14 80.9 107 40.2
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-13 79.7 120 40.0
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 2.9e-13 79.0 116 37.9
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.8e-13 78.6 115 38.3
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-13 78.6 114 40.4
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 6.5e-13 77.8 117 39.3
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.5e-13 77.4 108 34.3
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-12 76.6 120 35.8
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-12 76.6 121 38.0
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-12 76.6 116 37.1
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.9e-12 76.3 118 33.9
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-12 75.9 118 35.6
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-12 75.9 108 35.2
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-12 75.9 113 38.1
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-12 75.1 111 33.3
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-12 74.7 109 36.7
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.4e-12 73.9 117 37.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.2e-11 73.6 115 33.0
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-11 73.6 115 37.4
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-11 73.2 111 33.3
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.7e-11 72.4 113 32.7
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-11 72.0 118 34.7
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-11 72.0 109 35.8
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-11 72.0 115 38.3
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-11 71.6 109 35.8
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 4.7e-11 71.6 109 35.8
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 6.1e-11 71.2 110 38.2
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 6.1e-11 71.2 115 36.5
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 6.1e-11 71.2 113 31.9
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.0e-10 70.5 113 36.3
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-10 70.1 113 36.3
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-10 70.1 113 36.3
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-10 70.1 109 33.9
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.8e-10 69.7 114 35.1
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-10 69.7 122 35.2
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 2.3e-10 69.3 102 36.3
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-10 69.3 121 35.5
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-10 69.3 121 35.5
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-10 68.9 115 31.3
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-10 68.6 114 35.1
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-10 68.6 114 35.1
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-10 68.6 121 35.5
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-10 68.6 114 35.1
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.1e-10 68.2 114 34.2
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.1e-10 68.2 110 32.7
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-10 67.8 114 33.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-10 67.8 114 34.2
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.7e-10 67.8 118 33.9
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 8.8e-10 67.4 114 34.2
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.1e-09 67.0 115 32.2
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.1e-09 67.0 114 34.2
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-09 67.0 120 35.0
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-09 67.0 115 34.8
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.0e-09 66.2 114 33.3
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.6e-09 65.9 115 34.8
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-09 65.9 115 33.9
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-09 65.9 120 34.2
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.3e-09 65.5 114 33.3
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.3e-09 65.5 114 33.3
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.4e-09 65.1 118 34.7
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.4e-09 64.3 90 40.0
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 7.4e-09 64.3 117 30.8
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.7e-09 63.9 111 35.1
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-08 63.5 116 32.8
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-08 63.5 116 33.6
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-08 63.2 114 35.1
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.2e-08 62.8 114 31.6
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.2e-08 62.8 113 31.9
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-08 62.8 115 33.0
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-08 62.8 115 31.3
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-08 62.8 120 33.3
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.7e-08 62.0 113 32.7
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.7e-08 62.0 115 32.2
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.8e-08 61.6 113 31.0
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-08 61.6 119 32.8
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.3e-08 61.2 112 34.8
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.3e-08 61.2 115 31.3
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 6.3e-08 61.2 126 34.1
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.3e-08 61.2 114 32.5
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-08 60.8 110 34.5
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-07 60.5 110 35.5
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-07 60.5 110 35.5
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-07 60.5 118 33.1
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 1.1e-07 60.5 118 31.4
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-07 60.1 115 30.4
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.4e-07 60.1 90 36.7
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 1.4e-07 60.1 104 37.5
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-07 59.7 113 31.0
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 3.1e-07 58.9 116 31.0
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.1e-07 58.9 114 31.6
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-07 58.9 110 33.6
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-07 58.5 90 35.6
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-07 58.5 92 38.0
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-07 58.5 92 38.0
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.1e-07 58.5 113 31.9
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.3e-07 58.2 114 30.7
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.3e-07 58.2 115 32.2
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.0e-07 57.8 119 30.3
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 1.5e-06 56.6 85 38.8
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 92 38.0
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.5e-06 56.6 114 29.8
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.0e-06 56.2 90 37.8
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.0e-06 56.2 90 33.3
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-06 56.2 125 34.4
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 110 34.5
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-06 56.2 88 35.2
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-06 55.8 89 33.7
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-06 55.8 90 33.3
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 2.6e-06 55.8 93 39.8
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 2.6e-06 55.8 127 33.1
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 2.6e-06 55.8 127 33.1
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.6e-06 55.8 116 35.3
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-06 55.5 90 31.1
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 3.4e-06 55.5 93 39.8
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 4.5e-06 55.1 91 35.2
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.5e-06 55.1 115 30.4
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 4.5e-06 55.1 108 35.2
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-06 55.1 116 33.6
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-06 55.1 116 33.6
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-06 55.1 116 33.6
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-06 55.1 116 33.6
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.5e-06 55.1 119 29.4
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 5.9e-06 54.7 115 31.3
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 7.7e-06 54.3 121 33.1


User provided reference genes

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