Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G120700 Manihot esculenta HOM05D021322 ORTHO05D001895 6.8e-59 230.3 107 100.0
Manes.10G124900 Manihot esculenta HOM05D021322 ORTHO05D001895 3.9e-54 214.5 107 94.4
Manes.10G125000 Manihot esculenta HOM05D021322 ORTHO05D001895 7.5e-50 200.3 106 88.7
Manes.10G120901 Manihot esculenta HOM05D021322 ORTHO05D001895 3.7e-49 198.0 106 88.7
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 1.3e-28 129.8 108 61.1
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 2.4e-27 125.6 108 57.4
COL.COLO4_11751 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-13 80.1 106 40.6
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-12 76.6 105 39.0
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.8e-12 74.7 109 40.4
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.2e-12 74.3 109 39.4
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.2e-12 74.3 109 39.4
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-11 73.2 106 35.8
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.1e-11 72.0 107 34.6
Gorai.012G151200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.1e-11 72.0 105 38.1
Gohir.D04G163300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.9e-11 70.9 105 37.1
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 9.0e-11 70.5 107 37.4
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 1.5e-10 69.7 103 38.8
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-10 69.7 106 34.9
Gohir.A04G121842 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-10 68.9 105 37.1
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-10 68.9 105 37.1
Gohir.D04G163166 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-10 68.9 105 36.2
Potri.003G010730 Populus trichocarpa HOM05D011361 ORTHO05D015735 2.6e-10 68.9 110 36.4
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-10 68.6 109 37.6
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 3.4e-10 68.6 106 37.7
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 4.5e-10 68.2 105 35.2
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 7.6e-10 67.4 105 35.2
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 7.6e-10 67.4 108 36.1
Gorai.012G151100 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-09 65.9 105 36.2
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.2e-09 65.9 106 36.8
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 3.8e-09 65.1 105 35.2
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.9e-09 64.7 90 38.9
Duzib052G0486 Durio zibethinus HOM05D002599 ORTHO05D001895 8.4e-09 63.9 106 39.6
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 8.4e-09 63.9 108 36.1
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 8.4e-09 63.9 110 34.5
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 3.2e-08 62.0 101 31.7
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.3e-08 60.5 104 32.7
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.3e-08 60.5 104 32.7
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.3e-08 60.5 104 32.7
Potri.004G221400 Populus trichocarpa HOM05D011361 ORTHO05D026074 9.3e-08 60.5 109 38.5
Sabra03G0005600 Salix brachista HOM05D011361 ORTHO05D015735 9.3e-08 60.5 112 38.4
Sabra03G0005700 Salix brachista HOM05D011361 ORTHO05D015735 9.3e-08 60.5 112 38.4
Ciclev10003967m.g Citrus clementina HOM05D022543 ORTHO05D001895 1.2e-07 60.1 106 27.4
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-07 59.7 105 36.2
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.1e-07 59.3 106 34.0
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-07 59.3 106 33.0
Potri.003G010565 Populus trichocarpa HOM05D011361 ORTHO05D015735 2.7e-07 58.9 112 34.8
Potri.003G010598 Populus trichocarpa HOM05D011361 ORTHO05D015735 2.7e-07 58.9 112 34.8
Potri.004G221450 Populus trichocarpa HOM05D011361 ORTHO05D026074 2.7e-07 58.9 106 34.9
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 1.0e-06 57.0 103 34.0
Potri.003G010664 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.0e-06 57.0 116 31.9
COL.COLO4_25715 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.8e-06 56.2 90 32.2
Potri.004G221500 Populus trichocarpa HOM05D011361 ORTHO05D026074 1.8e-06 56.2 106 34.0
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.1e-06 54.7 71 42.3
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.7e-06 54.3 109 31.2
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.7e-06 54.3 107 28.0


User provided reference genes

Program Settings