Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 2176.0 1088 100.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1991.5 1088 91.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1820.4 1085 83.1
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1781.1 1093 80.3
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1779.6 1088 80.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1770.7 1085 81.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1770.4 1087 79.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1766.9 1091 78.8
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1762.3 1086 79.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1758.4 1065 80.8
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1757.7 1087 79.7
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1753.4 1086 79.9
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1753.4 1089 79.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1748.8 1086 79.0
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1745.7 1085 79.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1744.2 1086 78.9
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1743.4 1086 79.7
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1742.2 1085 79.5
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1726.8 1087 77.9
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1726.5 1085 78.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1723.4 1085 78.2
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1722.6 1086 78.0
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1709.9 1085 78.2
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1707.2 1082 78.3
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1706.0 1084 76.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1704.9 1083 76.5
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1703.7 1084 76.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1701.4 1173 72.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1701.4 1084 76.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1700.6 1086 76.8
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1700.6 1084 75.8
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1088 76.7
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1694.9 1087 76.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1694.5 1087 76.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1692.2 1088 75.9
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1691.0 1170 72.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1690.2 1085 76.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1688.7 1083 75.5
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1684.1 1085 75.9
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1099 74.7
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1083 75.3
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1681.8 1085 76.0
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1680.6 1083 74.9
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1679.1 1087 76.0
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1083 75.6
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1675.6 1087 75.7
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1675.2 1089 75.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1087 75.4
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1087 75.4
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1114 74.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1670.6 1084 75.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1656.7 1085 74.7
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1654.4 1084 74.8
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1653.6 1083 75.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1648.3 1082 73.9
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1648.3 1082 73.9
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1639.0 1081 73.6
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1628.2 1084 73.2
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1623.2 1089 74.1
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1623.2 1065 74.4
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1622.8 1113 72.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1621.3 1096 73.0
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1619.8 1088 73.2
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1618.6 1088 72.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1615.5 1083 73.0
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1615.5 1083 73.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1615.1 1086 73.3
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1614.4 1083 72.9
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1614.4 1083 73.1
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1083 73.0
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1083 73.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1610.1 1083 72.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1088 72.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1083 72.8
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1083 72.7
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1607.8 1083 72.7
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1095 72.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1605.1 1086 72.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1086 72.6
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1086 72.8
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1085 74.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 1083 72.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1087 71.7
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1601.3 1080 72.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1598.9 1101 72.7
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1085 73.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1595.9 1085 73.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1084 72.7
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1083 72.7
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1084 71.5
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1085 73.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1582.8 1016 77.4
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1112 69.9
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1096 70.8
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1095 71.1
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1079 70.7
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1086 70.5
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 995 77.5
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1153 67.4
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1555.4 1081 70.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1107 68.7
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1107 70.3
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1530.4 1002 74.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 1084 71.6
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1525.4 1056 71.0
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 1110 67.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1495.7 1089 67.1
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1476.8 980 74.3
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1472.2 1083 68.3
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1465.3 1105 64.7
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1385.9 1084 66.4
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1298.9 788 81.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1204.5 1088 54.8
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1186.4 689 85.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1182.9 1084 54.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1162.5 1126 52.2
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1151.3 1083 53.5
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1148.3 717 79.8
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1147.9 671 83.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1147.1 1086 52.9
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1114.4 758 73.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 6.9e-300 1034.2 842 61.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.0e-279 965.7 610 79.5
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-272 943.3 817 60.8
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.2e-255 885.2 960 49.0
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.4e-252 876.3 626 71.6
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 8.0e-240 834.7 499 80.6
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.9e-233 813.5 632 63.9
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 3.7e-221 772.7 978 47.4
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.5e-177 627.1 615 53.8
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.3e-170 604.7 429 71.3
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.5e-153 548.1 306 85.9
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.1e-132 478.8 391 62.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.2e-132 476.1 311 75.6
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 4.2e-87 327.4 299 59.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 5.1e-85 320.5 244 65.2
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 6.9e-66 256.9 136 84.6
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.2e-63 247.7 205 61.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 3.2e-47 194.9 138 65.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.5e-36 159.5 184 48.9
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 4.5e-33 147.9 108 63.9
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 8.5e-32 143.7 138 55.8
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 4.2e-31 141.4 156 49.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.7e-30 138.7 72 88.9
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 7.0e-26 124.0 97 63.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 6.5e-24 117.5 88 62.5
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 5.2e-21 107.8 150 43.3
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 2.8e-14 85.5 47 87.2
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 8.0e-14 84.0 49 75.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.8e-11 75.5 76 43.4
Nitab4.5_0001494g0120 Nicotiana tabacum HOM05D000418 ORTHO05D000317 9.2e-10 70.5 339 23.3
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 6.6e-08 64.3 39 76.9


User provided reference genes

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