Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 4.8e-199 697.6 338 100.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 4.9e-180 634.4 338 90.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.1e-166 588.2 336 83.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 2.0e-165 585.9 335 82.1
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 3.4e-165 585.1 336 82.4
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 4.5e-165 584.7 334 84.1
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.9e-163 579.3 336 82.1
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.6e-162 576.2 328 82.3
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.3e-161 572.4 334 79.3
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 3.0e-161 572.0 335 80.3
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 3.3e-160 568.5 328 81.1
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.3e-159 566.6 334 82.3
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.8e-159 565.5 333 79.6
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.4e-158 562.4 336 78.3
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 2.4e-158 562.4 336 80.7
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 4.1e-158 561.6 336 79.2
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.2e-157 560.1 335 78.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.5e-157 559.7 333 79.6
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.5e-157 559.7 335 78.8
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.0e-157 559.3 335 78.5
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 1.0e-156 557.0 336 78.0
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.3e-156 556.6 335 78.5
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-154 549.7 332 78.0
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.6e-154 548.5 336 76.2
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 4.7e-154 548.1 335 77.9
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.0e-153 545.4 328 77.4
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.0e-153 545.4 328 77.4
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 6.7e-153 544.3 335 76.1
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 6.7e-153 544.3 337 75.4
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.5e-152 543.1 336 76.5
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 5.7e-152 541.2 336 76.5
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 5.7e-152 541.2 336 75.0
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 8.2e-151 537.3 336 76.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 8.2e-151 537.3 338 74.6
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.1e-150 537.0 327 77.7
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.8e-150 536.2 336 75.3
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 2.4e-150 535.8 327 77.4
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 2.4e-150 535.8 328 77.7
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.1e-150 535.0 336 75.3
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 5.3e-150 534.6 328 76.5
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.2e-149 533.5 328 77.7
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.2e-149 533.5 327 76.8
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 2.6e-149 532.3 324 77.2
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.6e-149 532.3 335 75.5
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 2.6e-149 532.3 338 74.3
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 4.5e-149 531.6 335 73.7
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.0e-148 530.4 336 74.7
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 2.9e-148 528.9 336 73.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 5.0e-148 528.1 329 76.6
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 6.5e-148 527.7 329 76.9
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.5e-147 526.6 334 73.7
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.9e-147 526.2 336 75.0
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.6e-146 523.1 336 72.3
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.7e-146 522.3 337 74.2
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.7e-146 522.3 335 72.5
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 4.7e-146 521.5 336 72.0
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-145 520.0 327 74.9
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 4.0e-145 518.5 336 72.0
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 4.0e-145 518.5 336 72.0
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 5.2e-145 518.1 336 73.8
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 8.8e-145 517.3 334 72.8
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.2e-144 516.9 336 71.1
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.3e-144 515.4 336 72.0
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.3e-143 513.5 336 71.7
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.7e-143 511.9 327 73.1
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 7.0e-142 507.7 327 73.1
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-141 506.9 336 70.2
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.6e-141 506.5 327 72.8
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.0e-141 506.1 340 71.2
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.3e-140 503.4 327 72.8
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.7e-140 503.1 328 71.3
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 3.8e-140 501.9 328 72.3
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 5.0e-140 501.5 327 71.6
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 8.5e-140 500.7 333 70.9
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.5e-139 500.0 327 72.8
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.5e-139 500.0 336 69.3
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.5e-139 500.0 327 72.8
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.9e-139 499.6 337 70.0
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 4.2e-139 498.4 328 72.9
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 7.2e-139 497.7 328 71.6
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.1e-138 496.1 335 70.1
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.6e-138 495.4 335 69.9
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 3.0e-137 492.3 326 71.5
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.2e-137 491.5 344 68.3
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.5e-136 490.0 328 70.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.7e-136 488.0 327 71.6
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 9.8e-136 487.3 327 70.3
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 3.7e-135 485.3 335 67.5
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.1e-134 482.3 330 68.2
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 7.7e-133 477.6 311 70.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 7.7e-133 477.6 327 72.2
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.7e-132 476.5 334 69.5
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.9e-131 473.0 328 68.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 2.5e-131 472.6 339 67.0
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.1e-130 469.5 331 68.3
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 3.6e-130 468.8 327 69.1
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 6.1e-130 468.0 328 66.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 8.8e-129 464.2 327 67.6
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 4.4e-128 461.8 328 67.7
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.8e-127 459.1 333 63.7
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.1e-126 457.2 328 65.2
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 4.5e-125 451.8 332 65.4
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 8.6e-124 447.6 326 65.0
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.5e-123 446.0 289 75.1
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 9.5e-123 444.1 327 64.8
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-122 443.7 327 64.5
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.5e-120 436.8 327 63.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 2.9e-119 432.6 328 63.1
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 6.4e-119 431.4 319 66.1
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.4e-118 430.3 328 63.4
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 4.1e-118 428.7 328 62.8
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.0e-116 424.1 379 55.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.0e-116 424.1 311 65.9
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.9e-115 419.9 289 69.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.5e-115 419.5 331 61.6
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.5e-115 419.5 335 63.0
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.6e-114 416.8 313 62.9
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.2e-109 400.6 261 74.3
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.9e-107 393.3 253 71.9
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 3.3e-99 365.9 217 82.5
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.4e-95 351.7 209 81.8
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.5e-91 340.5 376 48.4
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.4e-89 333.2 345 49.6
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-88 330.5 305 57.0
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 4.2e-86 322.4 339 50.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.6e-85 318.9 272 57.7
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 3.0e-84 316.2 328 51.2
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 5.6e-83 312.0 342 47.7
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 4.2e-78 295.8 277 56.3
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.7e-77 293.1 250 59.2
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.3e-74 284.3 194 68.0
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.6e-74 283.9 404 40.6
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.5e-64 250.8 184 64.7
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.0e-60 238.0 185 58.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.9e-55 219.9 154 64.9
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.1e-49 201.4 371 33.4
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 5.0e-47 192.6 327 38.8
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 7.2e-46 188.7 134 67.2
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 6.1e-45 185.7 247 43.3
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.8e-44 184.1 137 63.5
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-42 177.9 153 56.9
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-42 177.9 139 62.6
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-42 177.9 139 62.6
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 1.3e-34 151.4 109 69.7
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 1.8e-33 147.5 89 77.5
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.4e-33 147.1 152 52.6
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.0e-31 141.7 90 72.2
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.3e-18 98.2 289 27.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.4e-17 94.0 76 55.3
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 9.1e-17 92.0 67 64.2
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 1.9e-14 84.3 67 61.2
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.0e-12 78.6 39 92.3
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.4e-09 68.2 51 72.5
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 1.8e-09 67.8 59 59.3
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.2e-08 65.1 89 43.8


User provided reference genes

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