Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G098500 Manihot esculenta HOM05D003192 ORTHO05D003596 0.0e+00 1409.0 781 100.0
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.7e-111 407.9 908 35.8
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 6.6e-111 406.0 941 34.6
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 4.3e-110 403.3 1049 34.2
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 3.6e-109 400.2 916 34.2
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 1.6e-104 384.8 938 35.7
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.6e-104 383.3 938 37.0
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 4.4e-99 366.7 884 33.6
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 4.9e-98 363.2 630 43.3
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 1.2e-96 358.6 546 42.3
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 2.7e-96 357.5 631 41.7
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.7e-95 354.8 900 33.8
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 6.6e-95 352.8 943 33.3
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 1.5e-94 351.7 939 34.3
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 5.6e-94 349.7 738 38.2
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 3.6e-93 347.1 850 34.2
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 3.8e-90 337.0 958 30.8
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 6.0e-88 329.7 874 32.8
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 1.0e-87 328.9 928 35.3
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 2.3e-87 327.8 917 33.9
CANSAT54G2948 Cannabis sativa HOM05D003192 ORTHO05D003596 3.0e-87 327.4 880 31.7
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 3.0e-87 327.4 947 30.1
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 1.5e-86 325.1 908 35.2
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 1.5e-83 315.1 643 36.2
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 7.6e-83 312.8 754 33.4
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.7e-82 311.6 867 31.7
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 1.6e-80 305.1 644 34.5
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 2.7e-80 304.3 536 40.9
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 2.7e-80 304.3 772 33.9
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 6.0e-80 303.1 749 33.4
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 6.0e-80 303.1 754 33.8
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.8e-79 301.6 645 34.3
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 3.0e-79 300.8 560 38.4
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 6.7e-79 299.7 775 33.2
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.9e-78 298.1 514 39.3
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.9e-78 298.1 690 35.9
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 5.6e-78 296.6 727 32.3
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 1.4e-76 292.0 725 33.9
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 5.3e-76 290.0 741 30.9
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 1.5e-75 288.5 918 29.1
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 7.6e-75 286.2 828 31.5
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 1.7e-74 285.0 586 37.0
Sopen10g017840 Solanum pennellii HOM05D003192 ORTHO05D003596 2.2e-74 284.6 865 31.3
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 4.9e-74 283.5 747 32.4
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 1.1e-73 282.3 861 29.8
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 1.9e-73 281.6 701 33.1
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 7.1e-73 279.6 724 33.7
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 7.1e-73 279.6 702 34.0
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 9.3e-73 279.3 637 33.6
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 9.3e-73 279.3 786 31.6
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 1.2e-72 278.9 724 33.1
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 3.5e-72 277.3 788 32.6
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 4.6e-72 276.9 577 34.8
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 6.0e-72 276.6 586 36.9
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 3.9e-71 273.9 749 33.1
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 5.1e-71 273.5 572 35.3
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 1.1e-70 272.3 626 33.5
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 1.5e-70 271.9 715 31.7
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 1.9e-70 271.6 742 33.3
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 4.3e-70 270.4 586 36.0
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 4.3e-70 270.4 872 31.8
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 9.7e-70 269.2 637 34.7
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 9.7e-70 269.2 918 27.7
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 3.7e-69 267.3 753 32.1
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 8.2e-69 266.2 718 32.5
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.1e-68 265.8 773 31.8
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.8e-68 265.0 648 33.0
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 2.4e-68 264.6 688 33.4
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 3.1e-68 264.2 761 31.7
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 1.2e-67 262.3 621 32.5
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 1.2e-67 262.3 735 31.0
Peaxi162Scf00003g00329 Petunia axillaris HOM05D003192 ORTHO05D003596 3.4e-67 260.8 850 31.5
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 1.3e-66 258.8 731 32.3
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 1.1e-65 255.8 728 31.9
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 1.4e-65 255.4 720 31.0
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.2e-65 254.2 784 30.4
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 3.2e-65 254.2 611 35.5
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 4.2e-65 253.8 761 30.5
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 1.2e-64 252.3 721 32.5
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 1.2e-64 252.3 797 29.5
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 4.6e-64 250.4 748 29.9
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 1.3e-63 248.8 636 33.0
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 5.1e-63 246.9 738 31.7
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 6.7e-63 246.5 1024 28.1
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 8.7e-63 246.1 624 33.5
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 8.7e-63 246.1 685 31.2
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 1.5e-62 245.4 651 32.3
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 4.3e-62 243.8 734 29.7
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 5.7e-62 243.4 724 30.4
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 7.4e-62 243.0 627 32.4
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.8e-61 241.1 724 30.5
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 2.8e-61 241.1 724 30.8
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.8e-61 241.1 411 40.4
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 3.7e-61 240.7 734 30.2
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.8e-61 240.4 480 37.5
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 1.4e-60 238.8 725 29.8
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 1.8e-60 238.4 411 40.1
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 5.3e-60 236.9 480 37.3
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 2.0e-59 235.0 792 29.9
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 2.6e-59 234.6 724 30.2
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 7.7e-59 233.0 416 36.3
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 1.0e-58 232.6 783 29.1
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 1.7e-58 231.9 812 32.3
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 2.9e-58 231.1 789 29.2
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 5.0e-58 230.3 411 39.7
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 1.1e-57 229.2 695 30.1
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 1.4e-57 228.8 738 28.6
DCAR_021912 Daucus carota HOM05D003192 ORTHO05D003596 2.5e-57 228.0 630 30.6
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 2.5e-57 228.0 689 29.8
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 5.5e-57 226.9 795 29.2
PSO063G1758 Papaver somniferum HOM05D003192 ORTHO05D003596 7.2e-57 226.5 687 31.1
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.2e-56 225.7 733 31.2
PSO782G1877 Papaver somniferum HOM05D003192 ORTHO05D003596 2.1e-56 224.9 684 31.6
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 2.7e-56 224.6 733 30.4
Dinv29065 Davidia involucrata HOM05D003192 ORTHO05D003596 2.7e-56 224.6 465 37.0
Lalb_Chr20g0122921 Lupinus albus HOM05D003192 ORTHO05D003596 4.6e-56 223.8 685 30.8
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 5.1e-55 220.3 660 31.2
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 5.1e-55 220.3 401 39.2
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 6.7e-55 219.9 401 39.4
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 3.3e-54 217.6 794 28.7
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 3.3e-54 217.6 589 32.8
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 9.7e-54 216.1 645 29.0
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 3.7e-53 214.2 919 26.3
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 2.4e-52 211.5 648 30.9
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.1e-52 211.1 452 33.8
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 4.1e-52 210.7 955 26.6
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 1.5e-51 208.8 901 26.9
Os03g0691500 Oryza sativa ssp. japonica HOM05D003192 ORTHO05D003596 2.6e-51 208.0 774 26.5
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 2.6e-51 208.0 692 28.5
HanXRQChr10g0289971 Helianthus annuus HOM05D003192 ORTHO05D003596 7.7e-51 206.5 809 26.9
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 1.7e-50 205.3 840 27.0
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 8.5e-50 203.0 432 35.4
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 1.1e-49 202.6 550 30.2
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 1.6e-48 198.7 636 30.3
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 2.7e-48 198.0 807 30.2
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 7.9e-48 196.4 737 28.8
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 1.4e-47 195.7 738 26.3
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 3.9e-47 194.1 641 29.5
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 2.0e-46 191.8 767 28.6
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 4.8e-45 187.2 866 29.1
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 6.3e-45 186.8 917 24.6
Oeu063542.1 Olea europaea HOM05D003192 ORTHO05D003596 1.8e-44 185.3 760 26.4
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 3.1e-44 184.5 631 29.0
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 5.3e-44 183.7 446 33.4
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 5.3e-44 183.7 357 35.9
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 9.1e-44 183.0 797 25.7
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 1.2e-43 182.6 928 25.5
TPR.G9507 Trifolium pratense HOM05D003192 ORTHO05D003596 1.6e-43 182.2 723 28.1
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 4.5e-43 180.6 522 32.2
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 7.7e-43 179.9 797 25.6
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.9e-42 177.9 500 30.4
Zm00001eb217110 Zea mays HOM05D003192 ORTHO05D003596 3.8e-42 177.6 609 27.4
Dinv20194 Davidia involucrata HOM05D003192 ORTHO05D003596 1.5e-41 175.6 244 45.5
SEGI_05807 Sequoiadendron giganteum HOM05D003192 ORTHO05D003596 1.8e-39 168.7 827 23.7
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 2.3e-39 168.3 800 25.5
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 4.0e-39 167.5 946 23.5
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 4.4e-38 164.1 935 23.6
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.4e-36 159.1 418 31.1
HPP92_026470 Vanilla planifolia HOM05D003192 ORTHO05D003596 3.1e-36 157.9 652 27.9
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 1.0e-34 152.9 795 25.8
ATR0767G239 Amborella trichopoda HOM05D003192 ORTHO05D003596 3.4e-30 137.9 836 25.6
Lj2P534T21 Lonicera japonica HOM05D003192 ORTHO05D003596 4.1e-28 131.0 195 40.5
AUR62017973 Chenopodium quinoa HOM05D003192 ORTHO05D003596 2.0e-27 128.6 290 32.4
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 5.9e-27 127.1 726 25.3
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.0e-26 126.3 241 37.8
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.9e-26 124.8 825 23.6
Ah.03g139960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 1.2e-24 119.4 293 32.4
Atru.chr6.1256 Acer truncatum HOM05D003192 ORTHO05D003596 3.6e-24 117.9 146 52.1
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 3.6e-24 117.9 551 26.1
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 8.0e-24 116.7 845 23.3
Lsat_1_v5_gn_5_109820 Lactuca sativa HOM05D003192 ORTHO05D003596 2.4e-20 105.1 407 27.8
EL10Ac6g15204 Beta vulgaris HOM05D003192 ORTHO05D003596 5.0e-18 97.4 375 28.3
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 6.6e-18 97.1 655 24.0
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 1.5e-17 95.9 817 23.4
QL01p016133 Quercus lobata HOM05D003192 ORTHO05D003596 2.5e-17 95.1 257 31.1
AUR62003664 Chenopodium quinoa HOM05D003192 ORTHO05D003596 4.7e-16 90.9 202 35.6
FAN23G2642 Fragaria x ananassa HOM05D003192 ORTHO05D003596 8.3e-13 80.1 133 39.1
Ah.02g123570 Amaranthus hybridus HOM05D003192 ORTHO05D003596 1.1e-12 79.7 208 31.7
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 1.4e-12 79.3 686 23.5
Actinidia30717 Actinidia chinensis HOM05D003192 ORTHO05D003596 9.2e-12 76.6 109 45.0
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 6.6e-10 70.5 794 21.8
Actinidia37399 Actinidia chinensis HOM05D003192 ORTHO05D038065 9.5e-09 66.6 96 38.5
Atru.chr6.1268 Acer truncatum HOM05D000132 ORTHO05D000058 1.4e-07 62.8 74 50.0
Glyma.09G199232 Glycine max HOM05D003192 ORTHO05D003596 1.4e-07 62.8 234 26.5
A09p12220 Brassica napus HOM05D003192 ORTHO05D014480 1.8e-07 62.4 128 37.5
Lj2P534T19 Lonicera japonica HOM05D003192 ORTHO05D003596 8.9e-07 60.1 574 22.0


User provided reference genes

Program Settings