Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 0.0e+00 2600.5 1269 100.0
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1288.5 1270 55.4
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1226.1 1270 53.5
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1223.4 1261 53.0
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1218.8 1271 52.2
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1210.7 1275 51.8
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1201.4 1258 53.2
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1198.7 1258 52.9
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1189.9 1301 51.8
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1187.6 1259 52.2
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 1185.6 1258 52.7
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1163.3 1266 51.7
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1161.0 1266 51.7
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1159.1 1322 49.3
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1154.8 1272 51.1
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1150.2 1277 51.2
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1126.3 1305 49.1
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1122.1 1266 49.7
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 0.0e+00 1115.1 1275 50.5
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 1081.2 1255 48.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1075.8 1285 47.5
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1075.8 1259 48.6
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 8.7e-312 1073.9 1262 49.4
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 5.8e-306 1054.7 1261 48.5
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 4.9e-305 1051.6 1256 48.4
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 8.3e-305 1050.8 1270 48.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 6.6e-302 1041.2 1265 47.9
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 8.6e-302 1040.8 1260 48.0
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 3.1e-299 1032.3 1181 49.3
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.2e-298 1030.4 1275 47.6
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.9e-293 1013.1 1252 47.6
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 3.6e-284 982.2 1262 45.5
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 8.4e-281 971.1 912 57.6
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 6.6e-278 961.4 1276 45.0
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.3e-277 959.1 1279 44.6
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 3.3e-277 959.1 1262 45.2
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.3e-273 947.2 1290 44.8
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 9.6e-269 931.0 1261 44.1
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.2e-265 919.8 1269 43.9
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.1e-264 917.5 1268 43.5
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 9.3e-264 914.4 948 52.6
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 1.2e-263 914.1 1192 45.9
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 2.7e-263 912.9 1267 43.7
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.7e-262 907.9 1251 43.3
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 2.8e-260 902.9 1300 42.2
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 6.7e-254 881.7 1267 42.5
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 1.5e-253 880.6 1390 42.0
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 5.3e-251 872.1 1254 42.7
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 5.3e-251 872.1 1294 41.0
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 6.0e-247 858.6 951 52.2
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 1.8e-243 847.0 1304 41.6
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 2.4e-243 846.7 1275 40.6
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 2.0e-242 843.6 1311 41.6
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 6.5e-241 838.6 1274 40.0
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 2.4e-235 820.1 1254 40.4
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 9.4e-232 808.1 1281 40.1
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 1.4e-219 767.7 920 47.5
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.9e-217 760.0 744 52.7
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.8e-211 740.7 1249 38.2
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 9.1e-211 738.4 1248 38.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.3e-209 734.6 781 51.0
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 1.7e-209 734.2 1257 37.9
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 2.9e-209 733.4 825 48.1
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 7.2e-208 728.8 1249 38.0
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 2.7e-207 726.9 1248 38.1
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 4.7e-207 726.1 1247 38.0
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 6.1e-207 725.7 1253 38.2
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 3.0e-206 723.4 1248 38.1
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.7e-204 717.6 1162 39.8
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 9.1e-203 711.8 1248 38.0
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 2.3e-201 707.2 771 50.6
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 1.6e-199 701.0 1255 37.6
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 3.7e-196 689.9 1003 42.7
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.2e-191 674.9 1283 36.0
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 8.9e-190 668.7 1456 33.7
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 5.6e-184 649.4 778 46.7
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.1e-174 618.6 1112 38.4
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 6.6e-169 599.4 937 41.0
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 6.4e-164 582.8 1256 33.8
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 4.6e-154 550.1 840 41.0
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 9.3e-139 499.2 584 46.7
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.2e-131 473.8 480 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 7.4e-128 463.0 1555 26.6
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 7.9e-122 443.0 1618 26.1
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.7e-119 435.3 414 54.6
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.1e-118 431.0 394 57.1
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 1.5e-117 428.7 1281 27.9
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.5e-107 394.8 999 29.5
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.3e-105 388.3 308 63.0
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 3.1e-102 377.9 403 51.6
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 3.1e-102 377.9 512 43.2
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 9.4e-99 366.3 281 64.8
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 1.1e-94 352.8 282 61.0
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 3.5e-85 321.2 283 56.9
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 1.1e-75 289.7 229 62.0
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.4e-70 272.7 262 56.5
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 4.6e-69 267.7 327 50.5
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 6.0e-69 267.3 452 34.5
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 6.6e-68 263.8 520 39.2
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 4.6e-61 241.1 928 25.8
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.7e-60 239.2 350 40.9
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.7e-60 239.2 350 40.9
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 8.9e-57 226.9 194 62.4
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 8.4e-55 220.3 240 48.8
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.6e-52 210.3 186 55.4
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 1.2e-50 206.5 196 56.6
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.6e-50 206.1 160 59.4
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.5e-48 199.5 188 55.9
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.1e-45 189.1 262 38.5
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 6.0e-45 187.6 574 25.4
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.2e-39 169.1 318 36.2
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 4.6e-37 161.4 229 42.4
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 1.1e-33 150.2 153 53.6
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 3.9e-28 131.7 354 29.4
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 5.1e-28 131.3 405 32.8
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 8.7e-28 130.6 194 40.2
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 2.1e-26 125.9 146 47.3
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.0e-23 117.1 202 32.7
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 4.3e-19 101.7 325 29.8
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 1.3e-18 100.1 144 42.4
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.6e-16 92.4 105 47.6
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.2e-15 89.4 156 34.6
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.4e-14 86.7 79 51.9
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 1.9e-14 86.3 112 42.9
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 2.5e-14 85.9 138 40.6
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 3.2e-14 85.5 94 45.7
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.3e-12 80.1 86 53.5
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 8.2e-10 70.9 96 40.6
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 3.4e-08 65.5 89 43.8
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.5e-08 65.1 206 29.6
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 7.7e-08 64.3 72 51.4
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 2.2e-07 62.8 51 60.8
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 2.9e-07 62.4 89 42.7
HPP92_011289 Vanilla planifolia HOM05D005395 ORTHO05D006352 5.0e-07 61.6 195 27.2
Nitab4.5_0002179g0030 Nicotiana tabacum HOM05D005395 ORTHO05D006352 6.5e-07 61.2 90 38.9
BolC3t19073H Brassica oleracea HOM05D005395 ORTHO05D024133 3.2e-06 58.9 42 66.7


User provided reference genes

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