Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 1.4e-91 339.7 184 100.0
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 9.3e-56 220.7 197 70.1
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.1e-52 209.5 201 64.2
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 2.1e-52 209.5 200 64.0
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.4e-51 206.8 191 65.4
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 1.8e-51 206.5 194 67.0
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.4e-51 206.1 193 65.3
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 9.0e-51 204.1 159 74.2
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 4.5e-50 201.8 189 63.5
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 9.9e-50 200.7 195 62.6
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.7e-49 199.9 198 64.6
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 1.7e-49 199.9 159 71.1
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 2.9e-49 199.1 190 62.6
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 2.9e-49 199.1 190 66.3
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 4.9e-49 198.4 191 64.4
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 4.9e-49 198.4 197 62.9
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.4e-49 198.0 196 62.8
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 1.4e-48 196.8 187 63.1
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 1.9e-48 196.4 196 64.8
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 9.3e-48 194.1 191 64.4
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 2.1e-47 193.0 191 59.7
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 3.5e-47 192.2 196 62.2
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 3.5e-47 192.2 170 66.5
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.6e-47 191.8 197 61.4
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 6.0e-47 191.4 190 63.7
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 6.0e-47 191.4 199 60.3
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 6.0e-47 191.4 159 70.4
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 6.0e-47 191.4 197 64.0
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.0e-46 190.7 163 68.1
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 1.3e-46 190.3 185 64.3
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 1.8e-46 189.9 188 62.2
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.3e-46 189.5 163 67.5
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 8.7e-46 187.6 159 68.6
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 1.1e-45 187.2 186 62.9
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.1e-45 187.2 185 63.2
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.1e-45 187.2 195 60.5
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 1.5e-45 186.8 191 59.2
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.5e-45 186.8 193 60.1
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 2.5e-45 186.0 186 62.9
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 2.5e-45 186.0 159 66.7
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 3.3e-45 185.7 230 54.3
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 4.3e-45 185.3 146 71.2
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 5.6e-45 184.9 191 61.8
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 5.6e-45 184.9 193 59.6
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 9.6e-45 184.1 175 62.3
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 2.1e-44 183.0 189 63.5
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 2.8e-44 182.6 192 59.9
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 3.7e-44 182.2 194 59.3
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 4.8e-44 181.8 196 58.7
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 4.8e-44 181.8 149 69.1
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 6.2e-44 181.4 185 59.5
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 1.1e-43 180.6 208 57.7
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.1e-43 180.6 193 58.0
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.4e-43 180.3 152 67.8
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 4.0e-43 178.7 129 79.8
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 4.0e-43 178.7 191 58.1
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 5.3e-43 178.3 196 57.7
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 1.2e-42 177.2 186 59.7
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 2.0e-42 176.4 179 59.8
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 2.0e-42 176.4 179 59.8
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 2.0e-42 176.4 179 59.8
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 2.0e-42 176.4 203 57.6
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 2.0e-42 176.4 187 57.2
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 2.6e-42 176.0 163 66.9
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 3.4e-42 175.6 157 66.2
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.8e-42 174.9 223 52.0
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 7.6e-42 174.5 157 65.6
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 1.0e-41 174.1 170 63.5
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 1.0e-41 174.1 159 63.5
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.0e-41 174.1 151 66.9
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.9e-41 172.6 158 67.7
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 3.8e-41 172.2 125 77.6
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 3.8e-41 172.2 155 62.6
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.4e-40 170.2 203 56.2
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 1.9e-40 169.9 122 73.8
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.9e-40 169.9 126 75.4
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.9e-40 169.9 149 66.4
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 2.5e-40 169.5 125 76.0
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.5e-40 168.3 125 74.4
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 2.7e-39 166.0 198 55.1
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 3.5e-39 165.6 199 57.8
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 7.9e-39 164.5 198 56.6
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 3.9e-38 162.2 194 52.6
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 3.9e-38 162.2 127 71.7
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 5.1e-38 161.8 186 56.5
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 7.4e-37 157.9 100 85.0
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 2.8e-36 156.0 128 65.6
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 3.1e-35 152.5 105 80.0
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 1.5e-34 150.2 192 52.6
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 5.8e-34 148.3 89 84.3
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 1.7e-33 146.7 171 55.0
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 8.4e-33 144.4 124 65.3
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 7.2e-32 141.4 196 51.5
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.6e-31 140.2 164 56.1
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 2.1e-31 139.8 164 56.1
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 6.1e-31 138.3 184 45.1
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.8e-28 129.4 128 60.2
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 4.8e-28 128.6 128 61.7
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 2.4e-27 126.3 128 56.2
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 3.1e-27 125.9 99 71.7
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 1.5e-26 123.6 106 65.1
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 2.0e-26 123.2 165 50.9
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 7.7e-26 121.3 132 54.5
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 7.2e-24 114.8 125 56.8
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-22 110.2 85 71.8
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.2e-20 103.2 83 71.1
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.2e-20 103.2 83 71.1
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.1e-19 99.0 129 55.0
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 5.3e-19 98.6 157 41.4
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 1.2e-18 97.4 125 48.0
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 9.4e-16 87.8 93 55.9
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.6e-15 87.0 150 37.3
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 1.8e-14 83.6 82 57.3
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 2.3e-14 83.2 90 53.3
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 5.5e-08 62.0 71 42.3


User provided reference genes

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