Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 0.0e+00 1382.5 839 100.0
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.8e-208 728.8 872 56.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 7.5e-145 518.8 891 45.3
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.4e-143 514.6 906 44.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.7e-125 454.5 969 40.7
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.9e-119 434.5 890 43.7
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 1.2e-118 431.8 890 43.6
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.3e-108 397.1 793 41.7
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.2e-105 388.7 922 39.2
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 3.8e-104 383.6 906 38.0
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 5.6e-100 369.8 916 37.2
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 2.5e-95 354.4 975 34.7
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 6.0e-94 349.7 926 37.7
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 7.9e-94 349.4 883 36.1
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.0e-93 349.0 891 35.9
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.3e-93 348.6 891 36.8
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.6e-92 343.2 914 35.7
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 4.0e-90 337.0 902 35.3
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 2.6e-89 334.3 965 36.0
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.4e-88 329.3 897 36.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 6.0e-86 323.2 853 35.4
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 7.7e-81 306.2 880 34.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 8.5e-80 302.8 871 36.7
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 5.5e-79 300.1 894 34.7
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 4.6e-78 297.0 904 31.9
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 3.9e-77 293.9 925 33.0
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.5e-73 282.0 859 33.3
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.9e-71 275.0 898 34.2
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.0e-69 269.2 880 33.3
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.0e-69 269.2 886 31.6
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 2.0e-68 265.0 893 32.9
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.6e-68 264.6 884 30.8
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.3e-67 262.3 884 32.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.1e-66 257.3 895 31.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 9.1e-66 256.1 893 31.6
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 4.5e-65 253.8 882 32.3
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 5.9e-65 253.4 871 34.2
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.0e-64 252.7 853 31.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-64 252.7 865 31.9
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.2e-62 245.7 940 34.4
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.6e-62 244.2 861 35.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.2e-61 240.4 850 32.6
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.3e-60 237.7 831 33.5
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 7.4e-60 236.5 897 33.1
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.3e-59 235.7 884 33.0
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 3.7e-59 234.2 934 31.9
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.1e-58 232.6 875 31.5
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 3.1e-58 231.1 888 30.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.0e-56 226.1 863 31.7
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.5e-55 221.5 859 32.2
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 4.2e-55 220.7 918 30.7
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.5e-55 220.3 831 33.7
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 2.7e-54 218.0 884 31.2
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.3e-53 214.9 876 30.7
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.5e-52 212.2 835 32.6
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.5e-52 212.2 863 30.9
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.7e-51 208.8 865 31.2
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 4.8e-51 207.2 922 31.2
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 8.3e-51 206.5 967 28.7
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-50 205.7 950 30.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 1.4e-50 205.7 941 32.3
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 7.0e-50 203.4 903 29.9
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.0e-49 201.8 893 31.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.7e-48 198.7 897 33.4
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.5e-47 194.9 1018 29.7
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 3.2e-47 194.5 941 28.6
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.6e-46 191.0 305 45.2
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 8.0e-46 189.9 884 30.3
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.4e-45 189.1 917 32.8
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 1.8e-45 188.7 905 29.1
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.8e-45 188.7 872 30.2
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 7.5e-44 183.3 898 29.5
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.2e-43 181.8 894 28.6
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 2.8e-43 181.4 907 31.3
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.8e-42 178.7 524 34.9
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.4e-42 178.3 848 28.3
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.4e-42 178.3 848 28.3
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 7.0e-42 176.8 877 28.8
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.5e-41 174.1 848 30.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.0e-40 172.9 932 29.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.0e-40 172.9 922 27.9
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.3e-40 171.8 920 29.7
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 6.6e-40 170.2 501 32.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.5e-39 169.1 916 28.6
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.9e-39 168.7 948 28.5
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.2e-38 166.0 816 30.5
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-38 165.2 882 31.5
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 5.2e-37 160.6 1019 29.0
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 5.2e-37 160.6 947 28.3
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 3.4e-36 157.9 918 27.3
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 4.4e-36 157.5 848 27.6
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 8.3e-35 153.3 872 27.5
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.1e-34 152.9 899 28.0
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.4e-34 152.5 933 27.8
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 2.4e-34 151.8 941 28.4
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.7e-33 148.3 830 27.5
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.7e-33 148.3 167 59.9
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.7e-32 145.6 868 26.7
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.5e-31 141.7 923 27.3
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 5.6e-31 140.6 851 27.1
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-30 139.4 852 27.2
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.6e-30 139.0 874 27.7
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.6e-30 139.0 939 28.9
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.8e-30 138.3 925 26.2
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.1e-30 137.1 818 27.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.1e-29 134.8 905 28.8
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 8.9e-29 133.3 850 26.5
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.7e-27 129.0 840 26.9
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 5.4e-26 124.0 912 25.7
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 9.2e-26 123.2 985 29.7
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.6e-25 122.5 939 26.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.7e-25 121.7 914 26.6
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 4.6e-25 120.9 909 26.0
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.0e-24 118.2 916 28.5
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 8.6e-24 116.7 882 27.7
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 4.3e-23 114.4 247 37.2
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 5.6e-23 114.0 351 35.3
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 9.5e-23 113.2 839 28.0
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 2.8e-22 111.7 918 25.8
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.2e-19 102.1 245 37.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-19 101.3 264 37.1
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 7.8e-17 93.6 875 25.0
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 1.7e-16 92.4 266 35.3
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 2.3e-16 92.0 180 41.7
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 2.3e-16 92.0 904 24.7
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 3.9e-16 91.3 98 58.2
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.9e-15 89.0 104 51.9
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 3.3e-15 88.2 268 33.2
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 2.3e-13 82.0 958 28.2
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.3e-13 82.0 110 48.2
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.2e-11 75.5 88 51.1
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.1e-10 73.2 69 59.4
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.9e-10 72.4 58 69.0
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 2.7e-09 68.6 304 30.3
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.7e-09 68.6 65 50.8
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 3.5e-09 68.2 135 43.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.5e-09 68.2 105 45.7
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 5.1e-08 64.3 773 24.2
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 6.6e-08 63.9 78 48.7
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.1e-07 63.2 232 32.3
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 1.5e-07 62.8 969 22.3
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.5e-07 62.0 261 30.7
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 7.3e-07 60.5 187 33.7
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 1.2e-06 59.7 55 54.5
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 2.8e-06 58.5 57 59.6
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 4.7e-06 57.8 185 31.9
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 4.7e-06 57.8 243 29.6
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.7e-06 57.8 296 29.1
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 6.2e-06 57.4 228 30.3
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 8.1e-06 57.0 227 32.6
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 8.1e-06 57.0 249 29.3


User provided reference genes

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