Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.5e-200 701.8 341 100.0
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.5e-165 585.1 356 80.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 8.5e-164 580.5 356 80.3
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 9.4e-163 577.0 335 84.5
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.7e-162 575.5 340 82.4
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.0e-160 569.3 358 77.7
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.3e-159 566.6 342 80.7
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.7e-159 566.2 342 80.7
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 4.9e-159 564.7 345 79.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.1e-158 563.5 350 78.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.8e-158 562.8 345 79.4
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 3.1e-158 562.0 349 78.8
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.2e-157 560.1 343 79.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.6e-157 559.7 342 78.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.0e-157 559.3 342 78.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.5e-157 558.5 355 77.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.5e-157 558.1 344 78.5
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 5.9e-157 557.8 353 77.1
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.9e-157 557.8 344 78.5
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.0e-156 557.0 344 79.4
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.9e-156 555.4 345 77.7
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 6.6e-156 554.3 345 78.6
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.5e-155 553.1 351 76.9
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.3e-155 552.0 342 77.2
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 5.6e-155 551.2 353 77.1
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.6e-155 551.2 344 77.9
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 9.5e-155 550.4 345 77.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.0e-153 547.0 355 74.9
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.0e-153 547.0 351 77.5
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.0e-153 545.4 353 74.5
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 5.2e-153 544.7 349 77.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 5.2e-153 544.7 353 75.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-152 543.1 373 73.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.4e-152 542.0 346 76.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 4.4e-152 541.6 350 75.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 7.5e-152 540.8 344 76.7
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 2.2e-151 539.3 354 75.4
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.7e-151 538.5 370 72.7
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.4e-151 537.7 356 75.0
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.4e-151 537.7 356 75.0
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.1e-150 537.0 337 78.3
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 5.4e-150 534.6 353 73.7
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 7.0e-150 534.3 353 73.9
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.7e-149 532.3 354 73.4
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.5e-149 531.9 350 73.7
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-148 529.3 342 76.6
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 5.0e-148 528.1 352 74.4
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-147 526.6 342 76.6
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.5e-147 525.8 353 74.5
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 4.3e-147 525.0 344 75.6
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.6e-147 524.6 374 70.6
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 9.5e-147 523.9 349 75.1
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.6e-146 523.1 372 70.2
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.1e-146 522.7 351 73.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.6e-146 521.9 348 75.3
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.6e-146 521.9 351 73.8
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.2e-146 521.2 342 76.3
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.8e-145 519.6 343 74.9
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.3e-145 519.2 354 72.0
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.0e-145 518.5 351 73.2
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 8.9e-145 517.3 353 71.1
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.2e-144 516.9 354 72.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.2e-144 516.9 344 74.1
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-144 516.9 353 73.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.0e-144 516.2 352 72.7
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.6e-144 515.8 352 74.4
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 3.4e-144 515.4 362 72.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 4.4e-144 515.0 354 72.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 5.8e-144 514.6 344 73.3
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 7.5e-144 514.2 348 72.7
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 7.5e-144 514.2 371 70.4
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.9e-143 512.3 346 72.0
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 2.9e-143 512.3 344 73.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.9e-143 512.3 352 73.3
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 4.9e-143 511.5 352 72.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 8.3e-143 510.8 344 73.8
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.9e-142 509.6 344 73.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 7.0e-142 507.7 344 73.8
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-141 506.9 344 73.5
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.5e-141 505.4 367 70.6
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.3e-140 503.4 344 72.1
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.9e-140 501.9 340 73.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.9e-139 499.6 353 70.8
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.5e-139 499.2 343 74.1
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.5e-139 499.2 344 73.0
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.3e-139 498.4 346 71.7
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 5.6e-139 498.0 354 69.5
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 7.3e-139 497.7 354 70.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.2e-138 496.9 354 70.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.6e-138 495.4 353 72.0
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 6.2e-138 494.6 336 73.5
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.8e-137 493.0 336 72.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 3.1e-137 492.3 344 73.0
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.1e-137 492.3 336 72.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 5.2e-137 491.5 340 71.5
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.4e-136 488.8 344 72.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.4e-136 488.8 344 72.4
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 5.8e-136 488.0 340 72.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 4.9e-135 485.0 371 65.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.9e-135 485.0 323 73.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 6.4e-135 484.6 320 77.2
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-134 483.4 350 70.0
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.4e-134 482.6 365 68.8
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.6e-133 478.4 352 70.2
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.3e-132 476.9 325 72.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-130 470.3 339 71.4
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 3.6e-130 468.8 344 69.8
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.7e-130 468.4 372 62.1
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.7e-130 468.4 344 69.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 8.1e-130 467.6 351 67.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.8e-129 466.5 347 67.7
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 7.6e-128 461.1 338 69.8
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.3e-127 460.3 362 63.0
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.7e-127 459.9 340 69.4
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.6e-125 451.8 312 71.5
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.8e-125 451.1 371 64.2
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.1e-124 448.4 363 62.3
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 8.6e-124 447.6 336 67.3
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.3e-123 445.3 325 71.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 9.6e-123 444.1 344 65.7
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 9.6e-123 444.1 353 64.3
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.2e-122 443.7 417 57.1
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.5e-120 436.8 353 62.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 9.9e-120 434.1 525 48.6
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.2e-118 428.7 431 55.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.3e-116 423.7 362 61.3
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.9e-116 422.2 347 63.7
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.5e-115 419.5 413 55.4
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.2e-112 410.6 329 63.2
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.9e-108 395.6 318 65.7
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.3e-107 392.5 371 58.2
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.5e-104 382.1 365 55.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.3e-100 370.5 343 56.6
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-97 360.5 334 57.5
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.0e-92 344.4 232 70.7
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.2e-88 330.9 363 48.8
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.0e-87 327.8 374 49.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.7e-79 300.4 303 57.1
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.2e-77 294.3 245 63.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.2e-77 294.3 245 63.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.7e-77 293.1 375 44.0
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 7.4e-75 285.0 371 45.8
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 5.9e-72 275.4 164 76.8
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.0e-71 274.6 226 69.0
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.9e-71 273.1 344 44.2
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.0e-71 272.3 216 67.6
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.9e-68 262.7 235 55.3
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-64 251.1 216 62.5
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 7.7e-64 248.4 386 37.8
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 2.9e-63 246.5 194 66.0
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.2e-53 214.5 134 79.1
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 6.1e-53 212.2 155 69.0
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 8.5e-47 191.8 128 67.2
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 7.8e-40 168.7 102 77.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.5e-38 164.5 359 34.0
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.2e-34 150.6 341 35.2
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.3e-31 141.4 122 58.2
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-27 126.7 72 75.0
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 4.4e-19 99.8 78 66.7
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.6e-16 89.7 63 66.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-07 61.6 33 72.7


User provided reference genes

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