Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 3.5e-91 338.2 160 100.0
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.3e-65 251.5 141 80.9
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.1e-63 246.9 149 77.9
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.8e-63 246.1 149 77.9
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 2.3e-63 245.7 152 77.0
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 1.7e-61 239.6 152 75.0
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.2e-61 239.2 153 73.9
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.9e-61 238.8 160 71.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 4.9e-61 238.0 144 77.8
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 4.9e-61 238.0 149 77.9
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.9e-60 236.1 124 83.1
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.9e-60 236.1 150 74.7
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.2e-60 233.8 121 85.1
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.2e-59 233.4 131 80.9
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 1.6e-59 233.0 143 77.6
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.7e-59 232.3 145 74.5
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.6e-59 231.5 133 78.9
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 6.0e-59 231.1 149 71.1
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 7.8e-59 230.7 154 71.4
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.0e-58 230.3 152 72.4
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.0e-58 230.3 158 70.9
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.3e-58 229.2 133 78.2
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 2.3e-58 229.2 149 74.5
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.3e-58 229.2 152 71.1
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 3.0e-58 228.8 147 72.8
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.1e-58 228.0 149 72.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 5.1e-58 228.0 146 72.6
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 6.6e-58 227.6 146 72.6
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 1.1e-57 226.9 152 71.1
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.5e-57 226.5 146 75.3
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.9e-57 226.1 142 74.6
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.5e-57 225.7 141 76.6
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 3.3e-57 225.3 152 72.4
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.3e-57 225.3 151 75.5
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 4.3e-57 224.9 160 68.8
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.3e-57 224.9 141 76.6
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 7.3e-57 224.2 131 76.3
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.2e-56 223.4 151 72.2
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-56 223.4 148 73.0
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.1e-56 222.6 149 69.8
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.1e-56 222.6 146 71.2
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.1e-56 222.6 125 77.6
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.8e-56 222.2 142 74.6
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.6e-56 221.9 146 70.5
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.7e-56 221.5 138 76.8
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.1e-55 220.3 149 70.5
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.4e-55 219.9 149 72.5
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-55 219.9 141 75.2
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.4e-55 219.9 149 69.8
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.3e-55 219.2 148 68.9
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.3e-55 219.2 141 73.8
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 3.1e-55 218.8 150 74.0
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 5.2e-55 218.0 145 71.0
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.8e-55 217.6 149 69.1
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.9e-55 217.2 149 68.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.2e-54 216.9 145 70.3
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 2.0e-54 216.1 144 72.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.0e-54 216.1 148 72.3
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.6e-54 215.7 139 74.1
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.6e-54 215.7 133 73.7
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 3.4e-54 215.3 124 78.2
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 9.9e-54 213.8 156 67.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 9.9e-54 213.8 147 69.4
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.7e-53 213.0 144 70.1
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 4.9e-53 211.5 144 68.8
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.9e-52 209.5 145 68.3
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 4.1e-52 208.4 144 67.4
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 4.1e-52 208.4 144 69.4
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.1e-52 208.4 149 65.1
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 7.1e-52 207.6 116 81.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.2e-51 206.8 139 70.5
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.2e-51 206.8 180 58.3
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.6e-51 206.5 144 68.8
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.6e-51 206.5 144 68.1
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.6e-51 206.5 147 68.7
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.6e-51 206.5 167 59.9
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 2.7e-51 205.7 143 68.5
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 3.5e-51 205.3 144 67.4
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.0e-51 204.5 150 64.0
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 7.8e-51 204.1 144 66.7
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 7.8e-51 204.1 144 66.7
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 7.8e-51 204.1 130 72.3
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.0e-50 203.8 144 65.3
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.3e-50 203.4 144 66.7
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.3e-50 202.6 132 74.2
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.9e-50 201.8 145 66.9
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 6.6e-50 201.1 145 64.8
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-49 200.3 138 68.1
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.5e-49 199.9 118 73.7
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.5e-49 199.9 118 73.7
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.9e-49 199.5 148 64.2
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.5e-49 199.1 142 69.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 9.5e-49 197.2 135 66.7
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 9.5e-49 197.2 152 62.5
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.1e-48 196.1 109 78.0
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 8.1e-48 194.1 140 59.3
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.1e-47 193.7 130 60.8
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.4e-47 192.6 145 62.8
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 8.9e-47 190.7 145 60.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.3e-45 186.8 124 70.2
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.9e-36 156.4 96 72.9
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 7.1e-36 154.5 147 61.2
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 3.0e-34 149.1 87 74.7
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.3e-33 144.4 82 78.0
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.1e-31 140.6 117 54.7
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 5.3e-31 138.3 138 48.6
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.2e-28 128.6 74 73.0
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 9.3e-28 127.5 96 56.2
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.2e-27 127.1 120 45.0
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.2e-27 127.1 159 49.1
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.3e-26 122.9 137 51.8
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 9.6e-25 117.5 117 53.0
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.3e-24 117.1 60 85.0
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.8e-24 115.9 92 54.3
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 4.8e-24 115.2 92 54.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.8e-23 113.2 89 52.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.6e-22 109.4 93 47.3
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 2.1e-19 99.8 99 47.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 4.6e-19 98.6 92 48.9
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-17 93.6 99 41.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 4.5e-14 82.0 67 53.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 4.9e-13 78.6 57 63.2
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 4.6e-11 72.0 64 51.6
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.6e-11 72.0 80 53.8
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.3e-08 63.9 37 75.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.3e-08 63.9 40 62.5
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 3.7e-08 62.4 39 69.2
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.1e-07 59.3 80 47.5
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 2.6e-06 56.2 88 37.5
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.0e-05 54.3 41 48.8


User provided reference genes

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