Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.0e-218 763.1 377 100.0
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 8.2e-176 620.5 377 79.8
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 5.3e-175 617.8 377 79.6
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 7.0e-175 617.5 376 79.3
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 4.5e-174 614.8 375 78.9
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.2e-163 580.1 374 74.3
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 4.4e-161 571.6 379 74.1
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 6.3e-160 567.8 373 74.0
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.4e-159 565.8 375 74.4
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 6.6e-157 557.8 375 73.3
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.1e-156 557.0 375 72.8
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 6.1e-155 551.2 373 72.7
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.0e-154 548.5 378 69.8
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 2.4e-151 539.3 373 70.0
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 3.2e-151 538.9 373 70.0
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.0e-149 533.9 373 68.4
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.9e-149 531.9 379 68.3
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 3.9e-149 531.9 373 69.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.6e-149 531.2 379 68.1
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.5e-148 527.3 379 67.8
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.2e-147 526.9 377 69.5
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 3.4e-145 518.8 373 67.6
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 7.5e-145 517.7 373 67.6
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.1e-143 513.8 375 66.9
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-143 513.8 380 67.1
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.9e-143 513.1 373 67.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.2e-143 510.8 380 66.6
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.2e-142 510.4 375 66.1
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.5e-142 508.8 375 66.1
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.5e-142 508.8 376 67.3
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 3.5e-142 508.8 375 65.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 7.8e-142 507.7 375 66.1
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.7e-141 506.5 376 66.8
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.7e-141 506.5 383 65.5
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 3.9e-141 505.4 374 68.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.5e-140 503.4 375 65.3
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.9e-140 503.1 374 66.0
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 4.3e-140 501.9 373 66.2
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-139 500.4 380 65.5
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.1e-139 499.6 376 64.9
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.1e-139 499.6 376 66.5
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 4.7e-139 498.4 378 63.8
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 8.1e-139 497.7 376 66.2
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 3.1e-138 495.7 377 65.8
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.5e-137 493.4 379 65.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 3.4e-137 492.3 379 64.6
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 3.7e-136 488.8 374 64.7
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.1e-135 487.3 375 62.9
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 7.1e-135 484.6 375 62.4
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 9.2e-135 484.2 375 62.4
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 9.2e-135 484.2 376 64.4
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 2.1e-134 483.0 375 63.2
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 2.1e-134 483.0 375 62.1
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 3.5e-134 482.3 380 63.4
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 4.6e-134 481.9 366 66.7
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.8e-134 481.1 375 63.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.3e-133 480.3 378 63.5
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.7e-133 479.9 375 63.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.3e-133 479.6 373 63.3
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.3e-133 479.6 373 63.0
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 3.0e-133 479.2 383 62.4
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 3.0e-133 479.2 377 64.5
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.9e-133 478.8 375 62.9
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 5.1e-133 478.4 378 61.6
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.6e-133 477.6 375 62.9
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.6e-133 477.6 375 62.9
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 7.3e-132 474.6 373 61.4
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.6e-131 473.4 373 63.3
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 2.8e-131 472.6 390 61.8
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.8e-130 469.9 373 64.6
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-129 466.8 375 61.9
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 2.9e-128 462.6 373 61.1
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 3.2e-127 459.1 379 62.0
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.4e-127 458.4 374 59.6
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.3e-125 453.8 352 62.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.6e-125 451.4 377 61.8
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.9e-124 449.9 378 62.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-123 446.8 361 59.6
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.1e-122 444.1 365 60.3
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.6e-121 439.5 374 63.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 4.4e-121 438.7 380 60.3
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 5.8e-121 438.3 377 61.5
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.9e-120 436.0 375 59.7
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 2.9e-120 436.0 381 60.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.1e-119 434.1 380 59.7
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 7.1e-119 431.4 376 60.9
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 7.1e-119 431.4 379 60.7
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 9.3e-119 431.0 381 59.1
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.1e-118 429.9 379 60.2
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 6.0e-118 428.3 383 58.7
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 7.8e-118 427.9 374 59.1
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-117 426.8 374 58.3
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.5e-116 423.7 374 56.4
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.6e-115 420.2 374 57.0
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.1e-114 417.5 384 56.5
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 6.9e-114 414.8 373 56.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.5e-113 413.7 377 56.2
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.4e-113 412.1 369 57.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.9e-112 409.5 374 58.6
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 1.0e-109 401.0 378 55.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.0e-109 401.0 367 57.8
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.7e-109 400.2 382 53.4
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 1.1e-108 397.5 360 55.0
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.7e-96 357.1 342 52.9
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.2e-96 356.7 342 52.9
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.0e-93 347.8 462 43.7
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.4e-87 327.4 298 54.7
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.2e-87 326.2 376 47.1
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.3e-85 320.1 372 47.0
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.9e-84 317.0 379 45.6
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.8e-82 310.5 287 55.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 7.7e-81 305.1 383 43.6
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 4.4e-76 289.3 360 44.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.5e-73 280.8 353 44.5
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 5.2e-69 265.8 351 43.0
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.7e-64 250.8 380 38.9
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.2e-64 250.4 374 38.5
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.3e-61 240.4 182 64.3
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 1.8e-58 230.7 242 52.9
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.2e-57 228.0 198 56.6
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.0e-53 214.9 202 50.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 5.5e-47 192.6 261 40.2
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 5.5e-47 192.6 178 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 4.0e-45 186.4 243 41.2
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 2.6e-44 183.7 162 56.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.7e-41 173.7 130 62.3
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.3e-40 170.6 130 62.3
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 4.3e-39 166.4 144 55.6
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 5.6e-39 166.0 291 32.3
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.8e-37 159.1 130 60.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 4.7e-30 136.3 93 64.5
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 8.0e-30 135.6 93 64.5
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.8e-29 134.4 104 64.4
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.2e-29 132.9 93 62.4
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-28 131.3 257 38.9
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.6e-28 130.6 93 62.4
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.9e-26 124.4 98 59.2
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 9.2e-26 122.1 286 27.3
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.7e-25 120.6 111 53.2
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-20 104.8 89 62.9
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.3e-19 101.7 100 56.0
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.3e-19 101.7 100 56.0
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.3e-19 101.7 70 62.9
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.3e-15 86.7 81 55.6
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.8e-13 79.3 65 60.0
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 8.9e-13 79.0 75 53.3
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.0e-12 77.8 191 35.6
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 9.9e-12 75.5 45 84.4
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 3.8e-11 73.6 58 60.3
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 4.1e-10 70.1 86 46.5


User provided reference genes

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