Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 2.2e-66 255.4 118 100.0
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 4.0e-36 154.8 119 63.9
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 6.2e-21 104.4 106 50.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.1e-20 103.6 115 46.1
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 3.1e-20 102.1 113 45.1
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 4.0e-20 101.7 113 47.8
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 9.0e-20 100.5 118 48.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.2e-19 100.1 68 66.2
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.0e-19 99.4 108 46.3
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.6e-19 99.0 105 47.6
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.5e-19 98.2 118 42.4
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 5.8e-19 97.8 113 44.2
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 7.6e-19 97.4 119 42.0
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 9.9e-19 97.1 109 46.8
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.3e-18 96.7 107 49.5
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.7e-18 96.3 118 41.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 3.8e-18 95.1 102 50.0
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 3.8e-18 95.1 115 46.1
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 8.4e-18 94.0 117 45.3
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 8.4e-18 94.0 118 47.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-17 93.6 108 45.4
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 3.2e-17 92.0 105 43.8
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 3.2e-17 92.0 132 39.4
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 4.2e-17 91.7 111 42.3
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 4.2e-17 91.7 100 52.0
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 5.4e-17 91.3 97 46.4
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 7.1e-17 90.9 106 40.6
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 9.3e-17 90.5 104 46.2
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.2e-16 90.1 119 42.0
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.2e-16 90.1 118 40.7
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.6e-16 89.7 63 58.7
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.6e-16 89.7 61 59.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 2.1e-16 89.4 128 39.1
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 2.1e-16 89.4 120 43.3
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 2.1e-16 89.4 101 48.5
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 2.7e-16 89.0 102 39.2
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.7e-16 89.0 108 44.4
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 3.5e-16 88.6 115 46.1
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 4.6e-16 88.2 115 42.6
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 6.0e-16 87.8 57 63.2
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 7.9e-16 87.4 113 41.6
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 7.9e-16 87.4 115 42.6
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 7.9e-16 87.4 115 42.6
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 7.9e-16 87.4 105 47.6
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 7.9e-16 87.4 74 52.7
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 7.9e-16 87.4 74 52.7
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.0e-15 87.0 98 49.0
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.0e-15 87.0 80 46.2
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-15 87.0 61 57.4
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.0e-15 87.0 102 44.1
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.3e-15 86.7 62 66.1
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.3e-15 86.7 111 37.8
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.3e-15 86.7 111 37.8
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.3e-15 86.7 113 44.2
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.8e-15 86.3 62 64.5
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 3.0e-15 85.5 105 41.0
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.0e-15 85.5 121 42.1
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 3.0e-15 85.5 48 68.8
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.9e-15 85.1 121 42.1
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 3.9e-15 85.1 60 60.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 5.1e-15 84.7 105 41.9
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 5.1e-15 84.7 105 41.9
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 5.1e-15 84.7 106 38.7
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 5.1e-15 84.7 56 66.1
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 5.1e-15 84.7 118 41.5
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 6.7e-15 84.3 110 41.8
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 6.7e-15 84.3 110 41.8
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.7e-15 84.3 121 43.8
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 6.7e-15 84.3 107 38.3
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 8.7e-15 84.0 47 72.3
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 8.7e-15 84.0 73 53.4
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.1e-14 83.6 65 60.0
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.1e-14 83.6 67 52.2
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.5e-14 83.2 117 42.7
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.9e-14 82.8 101 41.6
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 1.9e-14 82.8 106 42.5
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.5e-14 82.4 58 60.3
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 2.5e-14 82.4 119 40.3
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 2.5e-14 82.4 119 40.3
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.5e-14 82.4 120 40.8
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.3e-14 82.0 106 39.6
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 3.3e-14 82.0 114 38.6
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 3.3e-14 82.0 117 38.5
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 4.3e-14 81.6 127 39.4
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 5.6e-14 81.3 44 70.5
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 5.6e-14 81.3 119 40.3
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 5.6e-14 81.3 114 40.4
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.4e-14 80.9 62 53.2
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 7.4e-14 80.9 57 59.6
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.3e-13 80.1 106 41.5
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.6e-13 79.7 49 71.4
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.6e-13 79.7 107 40.2
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.6e-13 79.7 64 57.8
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 2.1e-13 79.3 62 56.5
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 3.7e-13 78.6 53 62.3
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 3.7e-13 78.6 110 38.2
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 8.1e-13 77.4 48 64.6
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 8.1e-13 77.4 55 60.0
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.4e-12 76.6 64 59.4
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.8e-12 76.3 75 50.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 3.1e-12 75.5 56 57.1
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 3.1e-12 75.5 98 35.7
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 3.1e-12 75.5 107 38.3
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 3.1e-12 75.5 65 50.8
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 3.1e-12 75.5 62 48.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 4.0e-12 75.1 62 54.8
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 4.0e-12 75.1 64 51.6
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 5.3e-12 74.7 54 55.6
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 9.0e-12 73.9 46 65.2
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.2e-11 73.6 44 68.2
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.5e-11 73.2 51 54.9
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.0e-11 72.8 56 55.4
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 2.0e-11 72.8 65 53.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 2.6e-11 72.4 48 64.6
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 3.4e-11 72.0 99 42.4
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.5e-11 71.6 47 61.7
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.8e-11 71.2 75 45.3
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 9.9e-11 70.5 61 52.5
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.9e-10 68.9 70 44.3
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.9e-10 68.9 66 48.5
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 4.9e-10 68.2 72 44.4
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 8.4e-10 67.4 97 35.1
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 8.4e-10 67.4 92 39.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 8.4e-10 67.4 45 62.2
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.1e-09 67.0 91 38.5
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 4.2e-09 65.1 45 60.0
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 7.1e-09 64.3 48 56.2
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 9.3e-09 63.9 38 65.8
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 1.2e-08 63.5 77 44.2
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.7e-08 62.4 40 67.5
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.3e-07 60.1 39 61.5
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 3.0e-07 58.9 55 49.1
Eucgr.J03142 Eucalyptus grandis HOM05D008232 ORTHO05D010390 5.1e-07 58.2 72 38.9
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 6.7e-07 57.8 45 62.2
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 6.7e-07 57.8 55 45.5
Potri.010G248600 Populus trichocarpa HOM05D008232 ORTHO05D010390 1.5e-06 56.6 56 44.6
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 1.9e-06 56.2 58 41.4
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 1.9e-06 56.2 74 40.5
TWI31G1109 Tripterygium wilfordii HOM05D008232 ORTHO05D010390 3.3e-06 55.5 47 53.2
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 4.3e-06 55.1 72 38.9
CANSAT64G1479 Cannabis sativa HOM05D008232 ORTHO05D010390 7.4e-06 54.3 97 35.1
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 7.4e-06 54.3 55 40.0
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 9.6e-06 53.9 63 39.7
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 9.6e-06 53.9 56 46.4


User provided reference genes

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