Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.8e-79 299.3 159 100.0
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 9.1e-60 233.8 159 81.1
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 6.8e-55 217.6 161 75.2
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 7.8e-51 204.1 143 77.6
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.5e-49 199.9 158 71.5
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.9e-49 199.5 190 62.6
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 1.2e-48 196.8 159 71.1
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 8.0e-48 194.1 161 70.2
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.0e-47 193.7 161 64.0
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.4e-47 193.4 161 67.7
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 4.0e-47 191.8 161 67.1
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 5.2e-47 191.4 161 68.9
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.5e-46 189.9 161 67.1
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 2.9e-45 185.7 161 65.2
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 6.4e-45 184.5 161 65.8
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 1.9e-44 183.0 161 65.2
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 2.4e-44 182.6 158 65.2
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 7.0e-44 181.0 161 66.5
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 9.2e-44 180.6 159 65.4
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 9.2e-44 180.6 161 64.6
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 6.0e-43 177.9 152 64.5
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 6.0e-43 177.9 161 64.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 6.0e-43 177.9 161 64.0
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 7.8e-43 177.6 131 74.8
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 7.8e-43 177.6 147 70.1
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 7.8e-43 177.6 161 63.4
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.3e-42 176.8 161 59.6
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.3e-42 176.8 161 59.6
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.3e-42 176.8 161 59.6
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.3e-42 176.8 165 63.6
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 1.7e-42 176.4 161 59.6
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.7e-42 176.4 131 73.3
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 3.9e-42 175.3 140 69.3
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.9e-42 175.3 161 64.0
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 3.9e-42 175.3 159 62.9
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 5.0e-42 174.9 161 59.0
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 6.6e-42 174.5 161 59.0
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 8.6e-42 174.1 137 67.9
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.1e-41 173.7 162 64.8
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.5e-41 173.3 161 58.4
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.9e-41 172.9 167 64.7
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 5.6e-41 171.4 161 58.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 9.5e-41 170.6 161 61.5
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-40 170.2 168 63.7
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.2e-40 170.2 147 64.6
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 3.6e-40 168.7 160 62.5
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.6e-40 168.7 168 61.9
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 8.1e-40 167.5 159 59.7
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.1e-39 167.2 157 59.9
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 1.8e-39 166.4 151 62.9
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 4.0e-39 165.2 168 62.5
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 3.4e-38 162.2 134 65.7
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 5.8e-38 161.4 161 59.6
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 9.8e-38 160.6 133 64.7
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.3e-37 160.2 157 59.2
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.2e-37 159.5 153 58.2
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.2e-37 159.5 134 64.9
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.2e-37 159.5 134 64.9
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 3.7e-37 158.7 145 63.4
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 6.4e-37 157.9 172 51.2
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 3.2e-36 155.6 156 57.7
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 4.1e-36 155.2 126 63.5
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 5.4e-36 154.8 130 66.2
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 7.1e-36 154.5 159 59.7
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 7.1e-36 154.5 133 65.4
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 9.2e-36 154.1 161 55.3
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.2e-35 153.7 159 58.5
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 1.2e-35 153.7 161 56.5
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 3.5e-35 152.1 159 57.2
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 3.5e-35 152.1 199 49.2
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 1.7e-34 149.8 136 63.2
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 3.9e-34 148.7 116 71.6
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 3.9e-34 148.7 142 63.4
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 8.6e-34 147.5 163 55.2
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 2.5e-33 146.0 138 61.6
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 2.5e-33 146.0 162 55.6
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.6e-33 144.8 134 59.7
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 1.6e-32 143.3 161 55.9
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 2.8e-32 142.5 151 54.3
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 8.1e-32 141.0 171 53.8
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.8e-31 139.8 165 55.2
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.8e-31 139.8 150 58.0
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 3.1e-31 139.0 157 53.5
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 4.0e-31 138.7 134 59.0
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 5.2e-31 138.3 118 58.5
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.5e-30 136.7 135 60.7
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 4.9e-29 131.7 153 51.0
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 8.4e-29 131.0 152 53.9
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 1.4e-28 130.2 144 51.4
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 5.4e-28 128.3 137 54.0
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 5.4e-28 128.3 101 69.3
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 7.1e-28 127.9 146 52.7
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.1e-27 126.3 137 57.7
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 2.1e-27 126.3 161 52.2
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.5e-27 125.6 102 66.7
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 6.0e-27 124.8 118 55.9
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 1.0e-26 124.0 100 69.0
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 1.7e-26 123.2 133 55.6
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 6.2e-24 114.8 163 47.2
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 4.0e-23 112.1 109 56.9
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 8.9e-23 110.9 145 44.1
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 2.0e-22 109.8 109 56.0
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 2.0e-22 109.8 173 46.8
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 1.3e-21 107.1 103 58.3
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 7.1e-20 101.3 100 54.0
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 7.1e-20 101.3 163 43.6
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 7.1e-20 101.3 163 43.6
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.6e-19 100.1 89 60.7
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 1.0e-18 97.4 126 49.2
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 4.3e-17 92.0 95 57.9
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 7.3e-17 91.3 114 50.9
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 1.8e-15 86.7 167 39.5
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 2.4e-15 86.3 55 74.5
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 5.3e-15 85.1 78 52.6
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 9.0e-15 84.3 93 52.7
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.2e-14 84.0 76 57.9
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.8e-14 81.6 106 46.2
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 9.9e-14 80.9 85 57.6
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 2.9e-13 79.3 119 47.9
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 3.8e-13 79.0 119 42.0
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 8.4e-13 77.8 86 53.5
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 1.4e-12 77.0 139 42.4
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 3.2e-12 75.9 119 40.3
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 3.2e-12 75.9 85 55.3
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 3.2e-12 75.9 102 49.0
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 1.2e-11 73.9 84 56.0
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.6e-11 73.6 94 51.1
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 2.7e-11 72.8 130 38.5
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.3e-08 63.9 143 35.7
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 2.8e-08 62.8 43 67.4
CARHR144210 Cardamine hirsuta HOM05D005827 ORTHO05D005864 3.6e-08 62.4 52 61.5
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 1.8e-07 60.1 93 41.9
Cre06.g248800 Chlamydomonas reinhardtii HOM05D045397 ORTHO05D005864 9.0e-07 57.8 150 34.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 2.6e-06 56.2 72 50.0


User provided reference genes

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