Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.3e-240 835.1 415 100.0
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.2e-183 646.7 426 74.9
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 5.9e-183 644.4 398 78.4
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 4.6e-180 634.8 415 75.9
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.3e-179 632.5 415 73.7
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.5e-174 614.0 454 68.9
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 9.4e-173 610.5 425 71.3
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.2e-172 610.1 408 71.1
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.6e-172 609.8 401 72.1
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.3e-171 605.9 402 72.9
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 6.7e-171 604.4 393 72.8
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.5e-170 603.2 392 74.7
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 4.4e-170 601.7 392 73.5
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 5.7e-170 601.3 403 71.7
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 7.4e-170 600.9 390 72.1
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 6.3e-169 597.8 393 72.8
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.1e-168 597.0 438 66.7
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 3.1e-168 595.5 420 71.2
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 9.1e-168 594.0 410 69.8
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 2.0e-167 592.8 390 72.3
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 5.9e-167 591.3 416 68.8
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 5.9e-167 591.3 414 69.8
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.0e-166 590.5 409 69.9
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.0e-166 590.5 426 66.7
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 2.2e-166 589.3 413 69.5
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 2.2e-166 589.3 425 67.8
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 8.5e-166 587.4 418 68.4
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 3.2e-165 585.5 429 67.6
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 5.5e-165 584.7 407 70.5
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 2.7e-164 582.4 407 70.0
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 6.1e-164 581.3 421 68.6
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 6.1e-164 581.3 414 66.9
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 6.1e-164 581.3 405 69.9
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.4e-163 580.1 421 68.4
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 5.2e-163 578.2 403 70.0
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 6.7e-163 577.8 420 68.1
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 6.7e-163 577.8 419 66.3
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 2.0e-162 576.2 397 69.3
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 7.5e-162 574.3 395 69.4
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 9.7e-162 573.9 421 67.7
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 9.7e-162 573.9 418 67.7
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.3e-161 573.5 400 69.5
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 3.7e-161 572.0 420 67.1
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 8.2e-161 570.9 391 70.8
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.1e-160 570.5 393 70.2
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.8e-160 569.7 408 67.2
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 3.1e-160 568.9 461 62.9
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 3.1e-160 568.9 397 68.3
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.2e-159 567.0 407 66.8
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 2.7e-159 565.8 436 64.2
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 5.9e-159 564.7 394 68.3
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.3e-158 563.5 391 69.8
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 1.3e-158 563.5 419 65.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.2e-158 562.8 396 68.7
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 2.9e-158 562.4 426 64.8
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 8.5e-158 560.8 396 68.4
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.1e-157 560.5 416 65.9
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.9e-157 559.7 412 65.0
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 5.5e-157 558.1 426 64.1
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 1.2e-156 557.0 424 66.5
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.7e-156 555.8 408 66.7
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 8.0e-156 554.3 394 68.8
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 5.2e-155 551.6 405 65.2
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 3.4e-154 548.9 408 66.7
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.3e-153 547.0 395 65.6
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.6e-151 540.0 414 65.5
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 5.9e-151 538.1 391 65.7
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 7.7e-151 537.7 408 67.2
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 2.2e-150 536.2 429 60.6
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.8e-150 535.4 433 62.8
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 3.2e-149 532.3 414 64.5
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.2e-149 532.3 370 68.9
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 9.4e-149 530.8 409 64.1
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 2.1e-148 529.6 412 64.3
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 2.1e-148 529.6 412 64.3
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 2.7e-148 529.3 412 64.1
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 2.3e-147 526.2 393 65.4
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 2.3e-147 526.2 407 63.4
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 3.4e-146 522.3 419 62.8
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 7.0e-144 514.6 409 62.8
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.7e-142 510.0 363 67.5
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 2.9e-142 509.2 403 64.3
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.1e-141 507.3 401 63.3
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 4.3e-141 505.4 462 55.6
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.7e-137 493.4 412 60.9
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.2e-136 489.2 328 70.1
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 5.6e-133 478.4 383 63.4
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 8.3e-129 464.5 332 66.6
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.4e-128 463.0 390 60.3
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.4e-128 463.0 317 71.0
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.0e-126 457.6 329 64.1
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 9.5e-125 451.1 326 68.1
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.6e-124 450.3 400 53.8
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 8.9e-123 444.5 319 66.8
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.5e-119 432.6 341 63.9
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.2e-116 424.1 282 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.7e-113 413.7 391 51.9
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 7.6e-106 388.3 323 61.6
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.7e-105 387.1 346 56.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 7.1e-104 381.7 364 51.6
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.7e-102 377.1 410 48.8
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 1.7e-102 377.1 289 62.3
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.5e-101 374.0 291 63.2
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 7.3e-101 371.7 287 63.8
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 5.4e-96 355.5 385 50.1
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.4e-88 330.1 241 66.0
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 5.5e-88 328.9 213 70.4
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 9.3e-88 328.2 241 65.6
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.8e-83 313.9 237 64.1
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 5.3e-83 312.4 459 41.2
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.0e-78 298.1 177 88.1
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.0e-78 296.6 352 47.2
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 6.3e-76 288.9 178 85.4
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-75 287.3 190 71.1
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.6e-55 221.1 169 66.9
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 6.7e-54 215.7 148 70.3
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 7.4e-53 212.2 145 69.0
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.8e-51 207.6 404 35.9
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 4.1e-51 206.5 164 64.0
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 5.9e-50 202.6 278 41.7
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.6e-39 167.9 447 30.6
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 5.4e-35 152.9 433 27.9
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 7.0e-35 152.5 120 63.3
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.7e-34 149.1 422 28.7
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.8e-33 146.7 439 29.8
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 2.5e-32 144.1 445 28.8
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 2.8e-28 130.6 83 71.1
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 6.3e-28 129.4 235 37.4
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 8.3e-28 129.0 113 54.0
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.6e-26 124.8 94 61.7
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 5.0e-25 119.8 81 65.4
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.0e-22 110.5 85 65.9
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 2.9e-20 104.0 261 30.7
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 4.9e-20 103.2 72 75.0
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.3e-17 95.1 69 71.0
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.4e-14 85.1 73 60.3
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.1e-11 75.5 53 62.3
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 1.4e-06 58.5 37 70.3


User provided reference genes

Program Settings