Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G071662 Manihot esculenta HOM05D001694 ORTHO05D000248 3.5e-29 131.0 66 100.0
Manes.18G069802 Manihot esculenta HOM05D001694 ORTHO05D000248 1.0e-20 102.8 77 76.6
Manes.18G069900 Manihot esculenta HOM05D001694 ORTHO05D000248 1.3e-20 102.4 77 74.0
Potri.005G167800 Populus trichocarpa HOM05D001694 ORTHO05D000248 2.2e-15 85.1 74 63.5
Sabra05G0126600 Salix brachista HOM05D001694 ORTHO05D000248 3.7e-15 84.3 75 62.7
PGSC0003DMG400008553 Solanum tuberosum HOM05D001694 ORTHO05D000248 4.9e-15 84.0 70 61.4
Cpa.g.sc66.87 Carica papaya HOM05D001694 ORTHO05D000248 2.4e-14 81.6 75 60.0
GSVIVG01008995001 Vitis vinifera HOM05D001694 ORTHO05D000248 2.4e-14 81.6 74 62.2
Solyc12g056960.2 Solanum lycopersicum HOM05D001694 ORTHO05D000248 3.1e-14 81.3 70 61.4
Sopen12g029620 Solanum pennellii HOM05D001694 ORTHO05D000248 3.1e-14 81.3 70 61.4
Peaxi162Scf00160g01417 Petunia axillaris HOM05D001694 ORTHO05D000248 7.0e-14 80.1 70 60.0
TWI56G0263 Tripterygium wilfordii HOM05D001694 ORTHO05D000248 7.0e-14 80.1 80 57.5
Ciclev10000913m.g Citrus clementina HOM05D001694 ORTHO05D000248 1.2e-13 79.3 77 58.4
CSS0000558 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 1.6e-13 79.0 73 60.3
Atru.chr13.1260 Acer truncatum HOM05D001694 ORTHO05D000248 2.7e-13 78.2 76 59.2
Cc10_g07540 Coffea canephora HOM05D001694 ORTHO05D000248 5.9e-13 77.0 74 59.5
Rhsim06G0085000 Rhododendron simsii HOM05D001694 ORTHO05D000248 5.9e-13 77.0 77 53.2
Haze_00574 Corylus avellana HOM05D001694 ORTHO05D000248 1.3e-12 75.9 79 57.0
Medtr5g062290 Medicago truncatula HOM05D001694 ORTHO05D000248 1.3e-12 75.9 67 62.7
arahy.Tifrunner.gnm1.ann1.0T4V2C Arachis hypogaea HOM05D001694 ORTHO05D000248 1.7e-12 75.5 73 57.5
arahy.Tifrunner.gnm1.ann1.8X0KIE Arachis hypogaea HOM05D001694 ORTHO05D000248 1.7e-12 75.5 73 57.5
Cpa.g.sc20.222 Carica papaya HOM05D001694 ORTHO05D000248 1.7e-12 75.5 76 52.6
Cfa015921 Carpinus fangiana HOM05D001694 ORTHO05D000248 1.7e-12 75.5 79 57.0
CANSAT25G0023 Cannabis sativa HOM05D001694 ORTHO05D000248 2.3e-12 75.1 70 61.4
Hma1.2p1_0120F.1_g057120 Hydrangea macrophylla HOM05D001694 ORTHO05D000248 2.9e-12 74.7 74 56.8
Actinidia10302 Actinidia chinensis HOM05D001694 ORTHO05D000248 3.9e-12 74.3 78 56.4
CSS0048560 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 3.9e-12 74.3 75 56.0
CiPaw.06G021500 Carya illinoinensis HOM05D001694 ORTHO05D000248 3.9e-12 74.3 80 56.2
Gorai.009G239600 Gossypium raimondii HOM05D001694 ORTHO05D000248 5.0e-12 73.9 74 54.1
Prupe.1G512300 Prunus persica HOM05D001694 ORTHO05D000248 5.0e-12 73.9 77 53.2
Thecc.08G111200 Theobroma cacao HOM05D001694 ORTHO05D000248 5.0e-12 73.9 75 54.7
TAR625G0590 Trochodendron aralioides HOM05D001694 ORTHO05D000248 5.0e-12 73.9 76 56.6
Thecc.01G105200 Theobroma cacao HOM05D001694 ORTHO05D000248 6.6e-12 73.6 72 55.6
CiPaw.06G021800 Carya illinoinensis HOM05D001694 ORTHO05D000248 8.6e-12 73.2 80 56.2
Dinv44748 Davidia involucrata HOM05D001694 ORTHO05D000248 8.6e-12 73.2 74 55.4
Duzib093G0964 Durio zibethinus HOM05D001694 ORTHO05D000248 8.6e-12 73.2 75 53.3
Glyma.13G087500 Glycine max HOM05D001694 ORTHO05D000248 1.1e-11 72.8 66 59.1
FvH4_5g37950 Fragaria vesca HOM05D001694 ORTHO05D000248 1.5e-11 72.4 75 49.3
FAN08G1288 Fragaria x ananassa HOM05D001694 ORTHO05D000248 1.5e-11 72.4 77 49.4
FAN18G3022 Fragaria x ananassa HOM05D001694 ORTHO05D000248 1.5e-11 72.4 75 49.3
Gohir.D05G231400 Gossypium hirsutum HOM05D001694 ORTHO05D000248 1.9e-11 72.0 74 52.7
Rhsim05G0049400 Rhododendron simsii HOM05D001694 ORTHO05D000248 1.9e-11 72.0 77 49.4
Duzib264G0595 Durio zibethinus HOM05D001694 ORTHO05D000248 2.5e-11 71.6 72 55.6
FAN13G1626 Fragaria x ananassa HOM05D001694 ORTHO05D000248 2.5e-11 71.6 77 49.4
QL12p036057 Quercus lobata HOM05D001694 ORTHO05D000248 2.5e-11 71.6 76 56.6
TAR381G1132 Trochodendron aralioides HOM05D001694 ORTHO05D000248 2.5e-11 71.6 76 53.9
Nn1g05285 Nelumbo nucifera HOM05D001694 ORTHO05D000248 3.3e-11 71.2 74 55.4
Actinidia30752 Actinidia chinensis HOM05D001694 ORTHO05D000248 5.6e-11 70.5 74 55.4
Glyma.13G087400 Glycine max HOM05D001694 ORTHO05D000248 5.6e-11 70.5 64 59.4
CSS0008923 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 7.3e-11 70.1 73 56.2
RcHm_v2.0_Chr7g0239891 Rosa chinensis HOM05D001694 ORTHO05D000248 7.3e-11 70.1 77 49.4
TPR.G31688 Trifolium pratense HOM05D001694 ORTHO05D000248 7.3e-11 70.1 67 58.2
Medtr3g009030 Medicago truncatula HOM05D001694 ORTHO05D000248 9.5e-11 69.7 75 48.0
TWI36G0854 Tripterygium wilfordii HOM05D001694 ORTHO05D000248 9.5e-11 69.7 80 51.2
CSS0048246 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 1.2e-10 69.3 75 52.0
Phvul.008G171400 Phaseolus vulgaris HOM05D001694 ORTHO05D000248 1.2e-10 69.3 68 54.4
Medtr5g062190 Medicago truncatula HOM05D001694 ORTHO05D000248 1.6e-10 68.9 67 58.2
Potri.007G089400 Populus trichocarpa HOM05D001694 ORTHO05D000248 2.1e-10 68.6 72 48.6
VMungo0647G2333 Vigna mungo HOM05D001694 ORTHO05D000248 2.1e-10 68.6 68 55.9
Migut.O00463 Erythranthe guttata HOM05D001694 ORTHO05D000248 2.8e-10 68.2 75 49.3
Lj1g0020663 Lotus japonicus HOM05D001694 ORTHO05D000248 2.8e-10 68.2 64 56.2
SGA_v2.0_scaffold28G11941 Striga asiatica HOM05D001694 ORTHO05D000248 2.8e-10 68.2 70 52.9
Lj4C107T4 Lonicera japonica HOM05D001694 ORTHO05D000248 3.6e-10 67.8 71 53.5
MSTRG.24474 Avicennia marina HOM05D001694 ORTHO05D000248 4.7e-10 67.4 75 52.0
Haze_24965 Corylus avellana HOM05D001694 ORTHO05D000248 6.1e-10 67.0 69 50.7
MBI05_g06569_MAGBIO Magnolia biondii HOM05D001694 ORTHO05D000248 6.1e-10 67.0 77 48.1
MBI05_g43273_MAGBIO Magnolia biondii HOM05D001694 ORTHO05D000248 6.1e-10 67.0 77 48.1
Phvul.008G171300 Phaseolus vulgaris HOM05D001694 ORTHO05D000248 6.1e-10 67.0 64 60.9
Lj1g0015532 Lotus japonicus HOM05D001694 ORTHO05D000248 8.0e-10 66.6 64 56.2
AUR62044253 Chenopodium quinoa HOM05D001694 ORTHO05D000248 1.0e-09 66.2 75 48.0
vmacro21231 Vaccinium macrocarpon HOM05D001694 ORTHO05D000248 1.0e-09 66.2 91 45.1
Cfa002692 Carpinus fangiana HOM05D001694 ORTHO05D000248 1.4e-09 65.9 69 50.7
DCAR_012729 Daucus carota HOM05D001694 ORTHO05D000248 1.4e-09 65.9 75 46.7
COL.COLO4_16452 Corchorus olitorius HOM05D001694 ORTHO05D000248 1.8e-09 65.5 73 49.3
Gohir.A05G228900 Gossypium hirsutum HOM05D001694 ORTHO05D000248 1.8e-09 65.5 84 47.6
Lj1g0011177 Lotus japonicus HOM05D001694 ORTHO05D000248 1.8e-09 65.5 62 56.5
Psat2g074320 Pisum sativum HOM05D001694 ORTHO05D000248 1.8e-09 65.5 64 57.8
Gohir.A02G131900 Gossypium hirsutum HOM05D001694 ORTHO05D000248 2.3e-09 65.1 72 50.0
QL12p036042 Quercus lobata HOM05D001694 ORTHO05D000248 2.3e-09 65.1 76 52.6
Ah.05g170320 Amaranthus hybridus HOM05D001694 ORTHO05D000248 3.1e-09 64.7 71 49.3
CSS0048276 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 3.1e-09 64.7 75 48.0
CiPaw.03G139500 Carya illinoinensis HOM05D001694 ORTHO05D000248 3.1e-09 64.7 72 48.6
COL.COLO4_09924 Corchorus olitorius HOM05D001694 ORTHO05D000248 3.1e-09 64.7 72 55.6
Lalb_Chr10g0102211 Lupinus albus HOM05D001694 ORTHO05D000248 3.1e-09 64.7 64 53.1
MBI05_g14549_MAGBIO Magnolia biondii HOM05D001694 ORTHO05D000248 3.1e-09 64.7 74 50.0
Nitab4.5_0011630g0010 Nicotiana tabacum HOM05D001694 ORTHO05D000248 3.1e-09 64.7 42 78.6
Sc05g0007710 Simmondsia chinensis HOM05D001694 ORTHO05D000248 3.1e-09 64.7 74 48.6
Glyma.14G170600 Glycine max HOM05D001694 ORTHO05D000248 4.0e-09 64.3 70 54.3
HanXRQChr11g0320891 Helianthus annuus HOM05D001694 ORTHO05D000248 4.0e-09 64.3 72 50.0
HanXRQChr11g0320901 Helianthus annuus HOM05D001694 ORTHO05D000248 4.0e-09 64.3 71 52.1
MD08G1178600 Malus domestica HOM05D001694 ORTHO05D000248 4.0e-09 64.3 73 50.7
Lj1g0021779 Lotus japonicus HOM05D001694 ORTHO05D000248 5.2e-09 63.9 68 51.5
COL.COLO4_16451 Corchorus olitorius HOM05D001694 ORTHO05D000248 6.8e-09 63.5 73 49.3
Prupe.6G181100 Prunus persica HOM05D001694 ORTHO05D000248 6.8e-09 63.5 75 48.0
arahy.Tifrunner.gnm1.ann1.9Z3VQ4 Arachis hypogaea HOM05D001694 ORTHO05D000248 8.9e-09 63.2 67 53.7
Lj1g0008801 Lotus japonicus HOM05D001694 ORTHO05D000248 1.2e-08 62.8 64 53.1
AUR62038528 Chenopodium quinoa HOM05D001694 ORTHO05D000248 1.5e-08 62.4 75 45.3
AUR62044352 Chenopodium quinoa HOM05D001694 ORTHO05D000248 1.5e-08 62.4 75 45.3
Eucgr.F00487 Eucalyptus grandis HOM05D001694 ORTHO05D000248 1.5e-08 62.4 68 54.4
Manes.12G137500 Manihot esculenta HOM05D001694 ORTHO05D000248 1.5e-08 62.4 74 45.9
QL06p050101 Quercus lobata HOM05D001694 ORTHO05D000248 1.5e-08 62.4 73 43.8
QL06p050129 Quercus lobata HOM05D001694 ORTHO05D000248 1.5e-08 62.4 73 43.8
AUR62013532 Chenopodium quinoa HOM05D001694 ORTHO05D000248 2.0e-08 62.0 75 46.7
Gohir.A02G131700 Gossypium hirsutum HOM05D001694 ORTHO05D000248 2.0e-08 62.0 69 52.2
Gohir.D03G043100 Gossypium hirsutum HOM05D001694 ORTHO05D000248 2.0e-08 62.0 69 52.2
Gohir.D03G043200 Gossypium hirsutum HOM05D001694 ORTHO05D000248 2.0e-08 62.0 72 48.6
MD01G1025400 Malus domestica HOM05D001694 ORTHO05D000248 2.0e-08 62.0 71 50.7
Gorai.003G044300 Gossypium raimondii HOM05D001694 ORTHO05D000248 2.6e-08 61.6 72 47.2
Hund26945 Selenicereus undatus HOM05D001694 ORTHO05D000248 2.6e-08 61.6 74 45.9
HanXRQChr11g0320871 Helianthus annuus HOM05D001694 ORTHO05D000248 3.4e-08 61.2 75 49.3
Lalb_Chr04g0253201 Lupinus albus HOM05D001694 ORTHO05D000248 3.4e-08 61.2 64 53.1
Sabra05G0064500 Salix brachista HOM05D001694 ORTHO05D000248 3.4e-08 61.2 72 48.6
arahy.Tifrunner.gnm1.ann1.SG30IT Arachis hypogaea HOM05D001694 ORTHO05D000248 4.4e-08 60.8 67 50.7
Ciclev10025415m.g Citrus clementina HOM05D001694 ORTHO05D000248 4.4e-08 60.8 76 47.4
ECA232G3183 Erigeron canadensis HOM05D001694 ORTHO05D000248 4.4e-08 60.8 71 45.1
Gohir.A02G131800 Gossypium hirsutum HOM05D001694 ORTHO05D000248 4.4e-08 60.8 72 48.6
Gohir.D03G043166 Gossypium hirsutum HOM05D001694 ORTHO05D000248 4.4e-08 60.8 72 48.6
Gorai.003G044000 Gossypium raimondii HOM05D001694 ORTHO05D000248 4.4e-08 60.8 69 49.3
Gorai.003G044200 Gossypium raimondii HOM05D001694 ORTHO05D000248 4.4e-08 60.8 72 48.6
Lsat_1_v5_gn_9_44040 Lactuca sativa HOM05D001694 ORTHO05D000248 4.4e-08 60.8 72 44.4
Potri.005G078500 Populus trichocarpa HOM05D001694 ORTHO05D000248 4.4e-08 60.8 72 45.8
Thecc.08G111100 Theobroma cacao HOM05D001694 ORTHO05D000248 4.4e-08 60.8 73 46.6
CSS0031342 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 5.8e-08 60.5 74 51.4
CSS0050271 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 7.5e-08 60.1 43 62.8
COL.COLO4_16454 Corchorus olitorius HOM05D001694 ORTHO05D000248 7.5e-08 60.1 75 46.7
Actinidia29579 Actinidia chinensis HOM05D001694 ORTHO05D000248 9.8e-08 59.7 73 45.2
SalBow3G2740 Salvia bowleyana HOM05D001694 ORTHO05D000248 9.8e-08 59.7 74 43.2
arahy.Tifrunner.gnm1.ann1.5RQ1EV Arachis hypogaea HOM05D001694 ORTHO05D000248 1.3e-07 59.3 78 47.4
Atru.chr2.3256 Acer truncatum HOM05D001694 ORTHO05D000248 1.7e-07 58.9 76 44.7
MSTRG.943 Avicennia marina HOM05D001694 ORTHO05D000248 1.7e-07 58.9 77 42.9
EL10Ac1g01263 Beta vulgaris HOM05D001694 ORTHO05D000248 1.7e-07 58.9 69 49.3
CSS0022728 Camellia sinensis var. sinensis HOM05D001694 ORTHO05D000248 1.7e-07 58.9 50 60.0
Eucgr.F00489 Eucalyptus grandis HOM05D001694 ORTHO05D000248 2.2e-07 58.5 60 55.0
FAN26G0713 Fragaria x ananassa HOM05D001694 ORTHO05D000248 2.2e-07 58.5 74 44.6
Ciclev10026955m.g Citrus clementina HOM05D001694 ORTHO05D000248 2.9e-07 58.2 74 45.9
ATR0686G181 Amborella trichopoda HOM05D001694 ORTHO05D000248 3.7e-07 57.8 68 48.5
arahy.Tifrunner.gnm1.ann1.7BE6GS Arachis hypogaea HOM05D001694 ORTHO05D000248 4.9e-07 57.4 60 55.0
Eucgr.F00488 Eucalyptus grandis HOM05D001694 ORTHO05D000248 4.9e-07 57.4 92 44.6
Lj4g0007993 Lotus japonicus HOM05D001694 ORTHO05D000248 4.9e-07 57.4 68 50.0
TWI74G0739 Tripterygium wilfordii HOM05D001694 ORTHO05D000248 4.9e-07 57.4 77 42.9
arahy.Tifrunner.gnm1.ann1.59SVGU Arachis hypogaea HOM05D001694 ORTHO05D000248 6.4e-07 57.0 78 46.2
Dinv13039 Davidia involucrata HOM05D001694 ORTHO05D000248 6.4e-07 57.0 78 44.9
Migut.C00227 Erythranthe guttata HOM05D001694 ORTHO05D000248 8.3e-07 56.6 80 41.2
GSVIVG01002801001 Vitis vinifera HOM05D001694 ORTHO05D000248 8.3e-07 56.6 71 50.7
Lj6g0013549 Lotus japonicus HOM05D001694 ORTHO05D000248 1.1e-06 56.2 73 47.9
Peaxi162Scf00765g00134 Petunia axillaris HOM05D001694 ORTHO05D000248 1.4e-06 55.8 74 40.5
ATR0564G298 Amborella trichopoda HOM05D001694 ORTHO05D000248 1.9e-06 55.5 68 42.6
FAN23G2628 Fragaria x ananassa HOM05D001694 ORTHO05D000248 1.9e-06 55.5 74 41.9
TWI74G0686 Tripterygium wilfordii HOM05D001694 ORTHO05D000248 1.9e-06 55.5 77 41.6
VMungo0251G3660 Vigna mungo HOM05D001694 ORTHO05D000248 1.9e-06 55.5 76 46.1
Ca_17718_v3 Cicer arietinum L. HOM05D001694 ORTHO05D000248 2.4e-06 55.1 71 43.7
Phvul.002G261800 Phaseolus vulgaris HOM05D001694 ORTHO05D000248 2.4e-06 55.1 76 46.1
TPR.G10512 Trifolium pratense HOM05D001694 ORTHO05D000248 2.4e-06 55.1 75 42.7
Rhsim07G0200700 Rhododendron simsii HOM05D001694 ORTHO05D000248 3.2e-06 54.7 76 43.4
RcHm_v2.0_Chr2g0115211 Rosa chinensis HOM05D001694 ORTHO05D000248 3.2e-06 54.7 74 43.2
Lalb_Chr07g0185051 Lupinus albus HOM05D001694 ORTHO05D000248 5.4e-06 53.9 70 48.6
TAR381G0438 Trochodendron aralioides HOM05D001694 ORTHO05D000248 5.4e-06 53.9 59 49.2
FvH4_1g21360 Fragaria vesca HOM05D001694 ORTHO05D000248 7.0e-06 53.5 74 41.9
FAN19G2822 Fragaria x ananassa HOM05D001694 ORTHO05D000248 7.0e-06 53.5 74 41.9
GSVIVG01006369001 Vitis vinifera HOM05D001694 ORTHO05D000248 7.0e-06 53.5 74 45.9


User provided reference genes

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