Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 2147.5 1083 100.0
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1852.0 1087 85.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1834.3 1092 84.0
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1833.5 1092 83.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1832.8 1090 84.2
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1828.1 1090 84.3
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1826.2 1090 84.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1823.9 1092 84.5
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1821.2 1092 83.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1816.2 1086 83.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1810.8 1085 83.5
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1809.3 1103 82.2
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1805.8 1095 82.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1804.6 1092 84.1
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1801.2 1090 82.8
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1798.9 1083 82.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1797.7 1106 82.7
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1795.8 1095 82.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1789.6 1098 82.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1788.9 1090 82.8
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1782.7 1088 82.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1778.5 1086 81.6
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1778.1 1090 81.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1778.1 1086 82.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1774.2 1083 81.8
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1771.1 1092 81.8
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1768.4 1104 81.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1767.7 1086 80.9
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1763.4 1097 81.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1761.9 1084 81.4
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1760.0 1067 83.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1757.3 1134 79.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1751.5 1085 81.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1745.7 1085 80.2
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1739.5 1185 75.8
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1739.5 1093 79.1
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1734.5 1091 79.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1729.1 1089 79.8
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1084 79.6
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1089 79.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1728.4 1013 84.4
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1722.6 1091 80.0
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1098 78.1
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1717.6 1123 77.7
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1092 79.7
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1714.5 1087 79.2
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1714.1 1090 78.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1713.4 1085 78.7
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1712.6 1092 78.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1710.3 1085 78.5
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1709.9 1097 79.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1708.0 1084 78.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1707.2 1089 78.9
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1087 79.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1703.7 1086 78.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1084 78.1
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1090 78.3
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1085 78.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1083 78.1
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1702.6 1087 78.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1701.8 1085 78.7
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1701.4 1081 79.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1699.1 1087 77.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1077 78.6
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1085 78.3
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1695.2 1087 77.6
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1694.1 1077 78.4
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1692.2 1090 78.8
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1690.2 1087 77.4
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1689.9 1092 77.7
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1689.1 1085 78.4
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1688.7 1078 78.5
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1085 77.5
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1086 78.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1686.8 1007 82.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1686.8 1111 76.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1685.6 1090 78.2
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1683.7 1085 77.7
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1683.3 1085 77.7
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1096 76.9
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1682.2 1077 78.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1079 76.7
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1670.6 1085 76.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1092 76.9
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1084 77.2
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1085 76.3
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1667.1 1081 77.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1085 77.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1083 76.7
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1664.4 1169 73.3
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1664.0 1075 76.8
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1662.1 1084 76.0
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1084 76.2
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1085 77.2
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1198 71.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1658.3 1079 76.6
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1142 73.7
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1088 76.6
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1086 76.0
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1016 79.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1058 76.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 1115 73.9
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1605.5 1059 75.3
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1083 75.5
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1122 73.1
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1116 73.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1534.6 969 78.2
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1527.7 914 82.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 869 85.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1518.4 1095 72.8
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1493.0 1016 73.8
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1460.3 1056 68.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1435.6 1022 68.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1425.2 1110 69.0
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1424.1 1110 69.0
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1383.6 957 70.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1377.8 801 84.5
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 996 65.1
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1270.8 1068 62.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1221.5 849 73.0
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1198.7 757 80.3
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1194.5 748 78.9
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1166.0 719 78.9
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1133.2 1088 54.7
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1126.7 1046 53.5
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1105.9 988 56.1
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1088.9 739 72.9
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-300 1036.2 881 61.6
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.2e-281 971.8 887 59.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.6e-272 941.8 596 79.7
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.4e-268 929.5 777 59.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.5e-267 926.8 580 77.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 4.5e-243 845.5 967 45.3
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 7.3e-217 758.4 646 61.5
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.5e-217 758.1 671 56.9
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.2e-213 746.9 704 56.0
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.9e-204 717.2 452 79.4
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 5.2e-191 672.5 419 80.4
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.8e-187 658.7 504 69.8
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.9e-183 645.6 534 65.0
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.4e-180 637.9 415 75.9
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-170 605.1 478 68.6
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 9.6e-169 598.6 347 87.9
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 3.8e-165 586.6 1035 38.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.4e-156 558.1 393 67.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.1e-140 505.4 397 65.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.6e-134 485.0 309 76.4
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-132 478.8 329 70.8
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.8e-128 464.2 412 60.7
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.9e-116 424.9 989 30.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.2e-110 405.6 949 30.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.0e-109 400.2 289 76.5
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.0e-106 392.5 227 84.6
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.6e-102 377.1 997 27.9
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.2e-95 354.4 914 29.5
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.1e-79 300.1 154 89.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-60 238.8 222 56.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 3.4e-57 228.0 875 23.7
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 6.0e-54 217.2 310 44.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.9e-52 212.2 332 35.8
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 3.5e-46 191.4 124 79.0
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.3e-45 188.7 220 52.7
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 3.0e-45 188.3 154 64.3
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.4e-42 178.7 164 58.5
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 5.3e-42 177.6 150 58.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 5.5e-39 167.5 273 38.5
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.0e-37 161.8 134 63.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.0e-37 161.8 149 58.4
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 6.3e-35 154.1 460 27.6
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 8.5e-32 143.7 162 43.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.5e-28 132.9 424 25.9
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.3e-27 129.8 161 49.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.4e-26 126.3 111 55.9
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 7.7e-25 120.6 81 70.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 6.5e-24 117.5 294 25.9
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.5e-16 90.9 83 59.0
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.6e-14 86.3 59 66.1
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.6e-12 79.0 56 67.9
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.8e-11 75.5 51 68.6
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.7e-11 75.1 112 46.4
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.3e-11 74.3 45 75.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-09 69.7 77 51.9
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 2.5e-07 62.4 36 80.6
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 8.0e-06 57.4 41 70.7


User provided reference genes

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