Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 3971.4 2000 100.0
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2577.4 2010 65.9
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2565.4 2010 66.0
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2511.5 2028 63.7
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2364.3 2025 62.3
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2352.8 2015 62.2
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2347.8 2046 60.5
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2325.1 2015 60.3
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2272.3 2012 59.9
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2255.3 2015 59.6
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2242.2 2028 58.3
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2237.2 2008 60.3
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2234.5 2013 58.5
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2233.8 2017 58.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2232.2 1990 60.5
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2230.7 2011 59.1
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2229.5 2005 60.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2228.8 2027 58.1
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2219.9 2002 58.2
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2218.0 2012 58.8
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2211.8 2006 58.4
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2196.0 2014 58.5
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2193.3 2043 57.4
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2179.1 2009 58.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2167.5 2034 58.4
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2154.0 2037 58.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2141.7 2043 57.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2131.3 2040 56.2
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2078.5 2028 57.1
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2058.5 2040 54.7
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2032.3 2040 54.7
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1967.2 2021 54.1
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1956.0 2025 53.1
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1939.5 2018 53.0
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1937.2 2021 53.3
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1931.8 2045 52.0
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1929.1 2019 52.6
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1922.1 2031 52.9
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1907.5 2021 53.3
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1895.2 2019 51.6
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1882.5 2016 52.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1876.3 2028 51.9
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1873.2 2019 51.0
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1871.7 2019 51.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1859.0 2021 51.9
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1855.5 2063 50.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1843.9 2025 51.2
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1836.2 2016 51.4
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1832.0 2014 51.4
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1829.7 2020 51.4
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1825.1 2047 51.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1800.4 2038 49.7
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1786.9 2009 49.4
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1772.3 2017 48.4
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1771.1 2020 48.4
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1762.3 2032 48.3
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1758.8 2047 49.4
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1747.3 1738 55.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1742.6 2027 47.8
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1741.5 2008 50.4
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1730.3 2012 49.5
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1726.8 2015 49.4
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1721.8 2012 49.2
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1720.3 2032 48.8
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1719.9 1967 50.4
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1714.1 1736 55.3
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1708.3 2033 49.4
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1708.0 1945 48.7
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1706.4 2023 49.3
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1704.1 2025 49.3
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1689.9 2082 47.2
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1685.6 2011 48.7
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1685.2 1990 49.1
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1683.3 2023 49.3
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1678.3 2022 49.1
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1678.3 2023 49.4
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1677.5 2022 49.1
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1677.1 2022 49.2
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1665.6 2059 46.9
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1632.5 2023 46.3
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1630.5 1953 47.5
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1616.3 1946 46.7
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1577.4 2030 46.4
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1568.9 2030 45.4
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1557.0 2156 43.5
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1538.5 1468 56.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1536.9 2033 45.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1525.0 1969 45.9
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1521.9 1468 55.7
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1498.8 1799 47.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1489.6 2004 44.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1453.7 2021 43.2
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1374.0 2116 41.4
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1344.7 1203 59.4
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1284.2 1755 43.6
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1179.9 2031 36.4
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1128.6 1708 40.6
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 2.9e-296 1023.1 2150 33.5
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.0e-280 969.1 1709 37.3
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 2.8e-270 936.8 1500 37.3
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 9.3e-234 815.5 2183 30.2
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 9.9e-220 768.8 675 61.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.4e-213 747.7 2107 30.0
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 3.9e-208 730.3 2012 30.0
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.9e-186 658.3 1217 36.6
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.0e-171 609.4 1746 29.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 4.3e-154 550.8 1921 27.1
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.7e-142 512.3 439 62.9
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.8e-137 495.0 396 62.1
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.2e-136 490.7 1037 34.6
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 6.2e-129 467.2 339 70.2
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.9e-122 445.7 272 82.4
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 4.7e-121 441.0 385 56.9
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.8e-111 407.5 445 51.5
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.1e-108 399.1 358 59.5
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 6.9e-104 384.0 270 70.0
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 7.6e-95 354.0 516 44.0
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 6.9e-80 304.3 198 74.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.0e-67 263.8 372 42.5
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 4.8e-65 255.0 273 53.1
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 8.0e-52 211.1 222 52.7
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 6.8e-51 208.0 177 59.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.7e-46 193.4 180 56.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.6e-44 185.7 510 29.6
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.8e-41 176.0 178 58.4
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.2e-34 154.1 315 37.8
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.7e-30 140.2 83 74.7
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 2.9e-25 122.9 225 35.6
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-24 118.6 600 23.3
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 2.0e-23 116.7 332 26.8
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 3.9e-22 112.5 67 76.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 6.6e-22 111.7 67 76.1
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.3e-21 109.0 68 73.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 3.6e-20 105.9 66 75.8
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 6.2e-20 105.1 71 70.4
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.3e-19 103.2 280 29.3
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.2e-18 100.9 62 77.4
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.0e-18 100.1 105 50.5
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.3e-17 97.4 63 84.1
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-16 93.6 142 36.6
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 6.6e-14 85.1 56 76.8
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.2e-10 74.3 55 61.8
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 5.8e-10 72.0 125 36.8
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 2.1e-07 63.5 46 60.9


User provided reference genes

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