Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.3e-32 142.5 73 100.0
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.4e-23 111.7 70 82.9
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 7.0e-23 110.2 71 78.9
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 9.1e-23 109.8 69 82.6
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 9.1e-23 109.8 71 80.3
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.7e-22 108.2 68 83.8
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 2.7e-22 108.2 73 79.5
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.5e-22 107.8 71 78.9
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.5e-22 107.5 71 78.9
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 4.5e-22 107.5 73 80.8
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 4.5e-22 107.5 70 80.0
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 7.7e-22 106.7 71 80.3
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 7.7e-22 106.7 71 73.2
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.0e-21 106.3 75 77.3
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.0e-21 106.3 71 80.3
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.0e-21 106.3 71 78.9
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.0e-21 106.3 70 80.0
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.3e-21 105.9 71 77.5
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.3e-21 105.9 71 78.9
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.3e-21 105.1 73 79.5
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.3e-21 105.1 70 80.0
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.3e-21 105.1 75 76.0
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.3e-21 105.1 71 78.9
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.9e-21 104.8 68 80.9
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 3.8e-21 104.4 71 76.1
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 3.8e-21 104.4 68 80.9
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 5.0e-21 104.0 72 77.8
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 6.6e-21 103.6 60 86.7
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.6e-21 103.6 69 79.7
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 77.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 8.6e-21 103.2 72 77.8
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 8.6e-21 103.2 68 79.4
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 8.6e-21 103.2 72 80.6
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.5e-20 102.4 72 77.8
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.5e-20 102.4 71 77.5
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.5e-20 102.4 74 77.0
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.5e-20 102.4 71 76.1
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.9e-20 102.1 72 76.4
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.5e-20 101.7 60 85.0
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 79.2
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.2e-20 100.9 73 75.3
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 4.2e-20 100.9 72 75.0
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 4.2e-20 100.9 72 73.6
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 4.2e-20 100.9 71 73.2
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 5.5e-20 100.5 77 72.7
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 7.2e-20 100.1 58 84.5
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 7.2e-20 100.1 69 75.4
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 7.2e-20 100.1 68 79.4
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 7.2e-20 100.1 75 70.7
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 7.2e-20 100.1 69 78.3
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 9.5e-20 99.8 73 74.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 9.5e-20 99.8 58 89.7
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.2e-19 99.4 60 81.7
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 1.2e-19 99.4 73 75.3
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.2e-19 99.4 55 90.9
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.2e-19 99.4 59 81.4
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.2e-19 99.4 60 83.3
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.2e-19 99.4 71 70.4
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.6e-19 99.0 73 69.9
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.1e-19 98.6 58 86.2
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.1e-19 98.6 58 86.2
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 2.1e-19 98.6 69 76.8
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.1e-19 98.6 73 72.6
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 73 72.6
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 73 72.6
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 70 77.1
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 70 75.7
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.8e-19 98.2 70 75.7
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.8e-19 98.2 71 73.2
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 2.8e-19 98.2 58 86.2
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.8e-19 98.2 74 73.0
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 71 71.8
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 73 69.9
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 3.6e-19 97.8 58 84.5
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 84.5
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 84.5
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 84.5
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 84.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 86.2
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 86.2
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 4.7e-19 97.4 58 81.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 4.7e-19 97.4 72 73.6
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 6.1e-19 97.1 58 84.5
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 6.1e-19 97.1 58 84.5
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 6.1e-19 97.1 72 73.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 6.1e-19 97.1 72 72.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 6.1e-19 97.1 72 72.2
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 6.1e-19 97.1 73 72.6
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 8.0e-19 96.7 68 75.0
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 8.0e-19 96.7 68 73.5
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.0e-18 96.3 58 84.5
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.0e-18 96.3 71 73.2
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.0e-18 96.3 75 70.7
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.0e-18 96.3 58 79.3
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.4e-18 95.9 70 74.3
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.4e-18 95.9 74 71.6
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.4e-18 95.9 73 71.2
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.8e-18 95.5 70 74.3
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.8e-18 95.5 81 66.7
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.8e-18 95.5 71 73.2
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.8e-18 95.5 67 76.1
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 73 71.2
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 59 78.0
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.8e-18 95.5 74 71.6
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.8e-18 95.5 71 69.0
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.8e-18 95.5 70 74.3
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.8e-18 95.5 69 72.5
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.3e-18 95.1 69 71.0
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 3.0e-18 94.7 70 72.9
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 4.0e-18 94.4 72 72.2
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 5.2e-18 94.0 62 72.6
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 5.2e-18 94.0 79 65.8
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 6.8e-18 93.6 65 72.3
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.9e-18 93.2 74 68.9
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.5e-17 92.4 67 71.6
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 2.0e-17 92.0 60 78.3
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.0e-17 92.0 59 74.6
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 82.8
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 3.4e-17 91.3 67 73.1
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 3.4e-17 91.3 65 70.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 3.4e-17 91.3 64 71.9
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 3.4e-17 91.3 74 66.2
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 4.4e-17 90.9 72 68.1
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 5.7e-17 90.5 69 71.0
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.7e-17 90.5 60 75.0
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 5.7e-17 90.5 58 74.1
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 7.5e-17 90.1 58 74.1
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.3e-16 89.4 74 67.6
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.3e-16 89.4 74 67.6
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.8e-16 88.2 68 64.7
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.1e-15 86.3 58 70.7
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.1e-15 86.3 63 65.1
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 2.4e-15 85.1 55 76.4
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.2e-14 82.8 55 72.7
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.2e-14 82.8 68 69.1
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.6e-14 82.4 67 64.2
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.6e-14 82.4 67 64.2
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 3.5e-14 81.3 51 84.3
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 4.6e-14 80.9 66 65.2
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 1.3e-13 79.3 55 74.5
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-13 79.3 55 74.5
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 8.6e-13 76.6 58 63.8
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 4.3e-12 74.3 63 65.1
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 5.6e-12 73.9 58 60.3
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 9.5e-12 73.2 52 76.9
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 9.5e-12 73.2 47 74.5
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.2e-11 72.8 60 63.3
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.1e-11 72.0 41 82.9
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 2.8e-11 71.6 58 58.6
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 6.1e-11 70.5 57 57.9
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 1.4e-10 69.3 52 65.4
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.8e-10 68.9 58 58.6
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 4.0e-10 67.8 58 56.9
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 5.2e-10 67.4 56 69.6
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 5.4e-07 57.4 57 49.1
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 7.0e-07 57.0 32 87.5


User provided reference genes

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