Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 2.6e-29 131.7 84 100.0
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 4.7e-15 84.3 82 67.1
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 8.1e-15 83.6 81 76.5
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.4e-14 82.0 73 63.0
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.4e-14 82.0 91 54.9
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 4.0e-14 81.3 82 69.5
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 6.8e-14 80.5 82 69.5
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 1.2e-13 79.7 64 65.6
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.2e-13 79.7 85 57.6
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 1.7e-12 75.9 62 66.1
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 3.8e-12 74.7 58 72.4
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 8.4e-12 73.6 58 74.1
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.1e-11 73.2 64 65.6
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 1.2e-10 69.7 83 55.4
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.6e-10 69.3 82 62.2
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.6e-10 69.3 61 70.5
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 6.0e-10 67.4 84 52.4
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 2.3e-09 65.5 82 59.8
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 3.0e-09 65.1 69 60.9
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 3.9e-09 64.7 72 58.3
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 3.9e-09 64.7 82 56.1
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 6.6e-09 63.9 50 64.0
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 8.7e-09 63.5 39 82.1
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 1.5e-08 62.8 62 58.1
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 2.5e-08 62.0 65 60.0
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 2.5e-08 62.0 65 60.0
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 2.5e-08 62.0 65 60.0
FAN03G1835 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.3e-08 61.6 82 50.0
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 4.3e-08 61.2 70 52.9
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 5.6e-08 60.8 63 57.1
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 5.6e-08 60.8 72 54.2
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 5.6e-08 60.8 48 66.7
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 9.6e-08 60.1 54 64.8
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 1.2e-07 59.7 46 65.2
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 1.6e-07 59.3 56 57.1
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 6.2e-07 57.4 91 45.1
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 6.2e-07 57.4 82 56.1
FAN01G2227 Fragaria x ananassa HOM05D002241 ORTHO05D002458 6.2e-07 57.4 70 50.0
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 6.2e-07 57.4 64 57.8
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 6.2e-07 57.4 84 57.1
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 6.2e-07 57.4 65 55.4
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 8.1e-07 57.0 68 64.7
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 8.1e-07 57.0 65 52.3
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 8.1e-07 57.0 54 61.1
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 1.4e-06 56.2 67 53.7
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 1.4e-06 56.2 57 64.9
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 1.4e-06 56.2 53 58.5
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 1.8e-06 55.8 69 47.8
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 1.8e-06 55.8 69 47.8
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 1.8e-06 55.8 69 47.8
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 1.8e-06 55.8 69 47.8
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 1.8e-06 55.8 82 53.7
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 1.8e-06 55.8 48 64.6
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 1.8e-06 55.8 58 58.6
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 2.4e-06 55.5 64 56.2
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 3.1e-06 55.1 66 54.5
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 3.1e-06 55.1 68 55.9
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 5.2e-06 54.3 68 58.8
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 5.2e-06 54.3 55 58.2
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 5.2e-06 54.3 60 56.7
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 6.9e-06 53.9 37 75.7
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 6.9e-06 53.9 49 67.3
Os02g0533800 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 6.9e-06 53.9 63 54.0
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 6.9e-06 53.9 65 52.3
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 9.0e-06 53.5 57 59.6


User provided reference genes

Program Settings