Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.3e-63 246.1 119 100.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 5.8e-27 124.4 88 70.5
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.7e-26 122.9 88 63.6
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.9e-26 122.1 85 64.7
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 8.4e-26 120.6 85 63.5
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.1e-25 120.2 88 61.4
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.1e-25 120.2 90 60.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.4e-25 119.8 87 63.2
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.9e-25 119.4 88 64.8
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.5e-25 119.0 85 62.4
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.5e-25 119.0 88 63.6
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.2e-25 118.6 90 58.9
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 5.5e-25 117.9 88 62.5
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 7.2e-25 117.5 88 62.5
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 9.3e-25 117.1 88 59.1
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 9.3e-25 117.1 88 63.6
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.6e-24 116.3 86 64.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.6e-24 116.3 87 63.2
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.1e-24 115.9 86 60.5
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.6e-24 114.8 86 59.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.6e-24 114.8 86 59.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.6e-24 114.8 96 52.1
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 6.1e-24 114.4 85 57.6
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 7.9e-24 114.0 90 58.9
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 7.9e-24 114.0 88 62.5
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.0e-23 113.6 87 56.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.0e-23 113.6 85 61.2
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.3e-23 113.2 85 62.4
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.3e-23 113.2 87 58.6
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.3e-23 113.2 86 58.1
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.8e-23 112.8 86 61.6
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.0e-23 112.1 87 56.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.0e-23 112.1 90 56.7
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 5.1e-23 111.3 88 58.0
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.1e-23 111.3 109 53.2
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 5.1e-23 111.3 87 57.5
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.1e-23 111.3 86 60.5
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 5.1e-23 111.3 88 58.0
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.1e-23 111.3 97 59.8
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 6.7e-23 110.9 97 59.8
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 8.7e-23 110.5 87 58.6
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 8.7e-23 110.5 85 60.0
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.1e-22 110.2 85 58.8
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.1e-22 110.2 88 60.2
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.5e-22 109.8 97 54.6
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.5e-22 109.8 87 54.0
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-22 109.8 97 58.8
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.9e-22 109.4 97 60.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.9e-22 109.4 88 59.1
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.5e-22 109.0 87 58.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 3.3e-22 108.6 89 57.3
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 3.3e-22 108.6 97 59.8
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.3e-22 108.6 87 57.5
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 4.3e-22 108.2 87 55.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.7e-22 107.8 100 52.0
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.7e-22 107.8 97 57.7
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.7e-22 107.8 87 56.3
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 7.4e-22 107.5 85 58.8
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 7.4e-22 107.5 85 58.8
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 9.7e-22 107.1 85 56.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.3e-21 106.7 99 49.5
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.3e-21 106.7 85 60.0
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.3e-21 106.7 85 60.0
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.3e-21 106.7 85 60.0
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.3e-21 106.7 85 58.8
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.3e-21 106.7 87 52.9
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.6e-21 106.3 84 59.5
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.6e-21 106.3 87 57.5
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 2.2e-21 105.9 100 51.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.8e-21 105.5 84 58.3
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 2.8e-21 105.5 88 58.0
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.8e-21 105.5 85 54.1
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.8e-21 105.5 87 52.9
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 3.7e-21 105.1 86 57.0
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.7e-21 105.1 88 52.3
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 4.8e-21 104.8 89 51.7
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 4.8e-21 104.8 87 51.7
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 4.8e-21 104.8 87 50.6
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 6.3e-21 104.4 87 54.0
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.3e-21 104.4 87 51.7
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.3e-21 104.4 84 56.0
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 6.3e-21 104.4 88 52.3
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 8.2e-21 104.0 90 56.7
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 8.2e-21 104.0 84 57.1
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.4e-20 103.2 85 52.9
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.8e-20 102.8 84 53.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.4e-20 102.4 88 53.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.4e-20 102.4 88 53.4
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.4e-20 102.4 85 51.8
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.1e-20 102.1 87 51.7
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 3.1e-20 102.1 87 54.0
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 3.1e-20 102.1 87 49.4
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 3.1e-20 102.1 85 56.5
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.1e-20 102.1 88 53.4
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 4.1e-20 101.7 87 54.0
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 4.1e-20 101.7 85 54.1
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 4.1e-20 101.7 85 55.3
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 5.3e-20 101.3 87 50.6
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 6.9e-20 100.9 85 55.3
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 6.9e-20 100.9 84 53.6
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 9.0e-20 100.5 86 54.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 9.0e-20 100.5 86 55.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.2e-19 100.1 86 53.5
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.5e-19 99.8 85 54.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.5e-19 99.8 85 54.1
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.5e-19 99.8 85 54.1
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.0e-19 99.4 85 50.6
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.0e-19 99.4 85 54.1
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.0e-19 99.4 86 54.7
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 2.6e-19 99.0 88 53.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.6e-19 99.0 88 51.1
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.6e-19 99.0 85 56.5
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 3.4e-19 98.6 87 55.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 4.5e-19 98.2 86 54.7
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 5.9e-19 97.8 85 54.1
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 5.9e-19 97.8 85 54.1
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.7e-19 97.4 88 53.4
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.7e-19 97.4 88 53.4
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.3e-18 96.7 85 55.3
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.3e-18 96.7 86 50.0
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.7e-18 96.3 87 49.4
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 2.2e-18 95.9 87 48.3
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.9e-18 95.5 88 50.0
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.9e-18 95.5 96 50.0
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.9e-18 95.5 85 54.1
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.8e-18 95.1 89 49.4
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.0e-18 94.7 86 54.7
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 6.5e-18 94.4 87 47.1
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 6.5e-18 94.4 86 53.5
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.1e-17 93.6 83 53.0
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.4e-17 93.2 87 49.4
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 3.2e-17 92.0 83 48.2
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 9.4e-17 90.5 85 45.9
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 9.4e-17 90.5 87 44.8
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.6e-16 89.7 68 61.8
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.7e-16 89.0 85 47.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.7e-16 89.0 86 45.3
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 2.7e-16 89.0 88 45.5
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.3e-15 85.9 85 44.7
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.0e-15 85.5 86 50.0
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 3.9e-15 85.1 65 58.5
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 3.9e-15 85.1 86 44.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.5e-14 82.4 87 47.1
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 2.5e-14 82.4 86 46.5
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.3e-13 80.1 70 51.4
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.0e-11 72.8 87 37.9
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 2.0e-11 72.8 73 47.9
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.7e-10 69.7 87 36.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.9e-09 66.2 62 48.4
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 9.4e-09 63.9 60 51.7
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 4.7e-08 61.6 65 47.7
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.4e-07 60.1 84 33.3
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.8e-07 59.7 86 34.9
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 2.3e-07 59.3 83 33.7
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 8.8e-07 57.4 68 36.8
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 8.8e-07 57.4 68 36.8
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 9.7e-06 53.9 89 39.3


User provided reference genes

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