Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.8e-151 540.8 815 100.0
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 2.7e-54 218.0 201 54.7
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.9e-52 211.8 172 60.5
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.9e-52 211.8 176 59.7
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 7.3e-52 209.9 201 55.2
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.2e-49 202.6 204 53.4
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 2.6e-49 201.4 201 52.7
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.4e-49 201.1 176 55.7
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.5e-49 199.9 176 55.1
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.5e-49 199.9 176 55.1
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.3e-48 199.1 176 55.7
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 9.2e-47 193.0 204 50.0
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 7.8e-46 189.9 186 53.8
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.3e-45 189.1 148 60.1
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 6.6e-45 186.8 200 49.0
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.1e-44 186.0 203 49.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 5.6e-44 183.7 202 50.5
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 2.8e-43 181.4 202 49.0
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 2.8e-43 181.4 202 49.0
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.3e-42 178.3 192 51.0
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.5e-41 175.6 203 47.3
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.6e-41 174.9 201 47.8
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.8e-41 173.7 193 50.3
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 7.5e-41 173.3 202 49.5
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 8.3e-40 169.9 202 48.0
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 2.0e-38 165.2 201 46.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.0e-37 162.9 150 55.3
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 1.3e-37 162.5 205 45.4
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 3.0e-37 161.4 143 58.0
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.6e-37 160.2 209 45.0
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 8.6e-37 159.8 155 52.9
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 4.3e-36 157.5 225 43.1
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 7.3e-36 156.8 149 54.4
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 7.3e-36 156.8 174 44.8
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 9.5e-36 156.4 198 46.5
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 3.6e-35 154.5 203 43.8
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 4.7e-35 154.1 200 44.0
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 6.2e-35 153.7 226 42.5
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 8.9e-34 149.8 192 44.8
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.5e-33 149.1 212 44.8
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 2.6e-33 148.3 187 43.3
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 7.5e-33 146.7 146 54.8
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.3e-32 146.0 177 42.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 2.2e-32 145.2 155 51.6
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.9e-32 144.8 210 41.9
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 3.7e-32 144.4 181 48.1
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 4.9e-32 144.1 132 55.3
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 6.4e-32 143.7 177 42.4
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.1e-31 142.9 177 41.8
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.4e-31 142.5 183 45.9
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.4e-31 141.7 181 44.8
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 7.1e-31 140.2 181 44.2
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 7.1e-31 140.2 201 40.8
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 7.1e-31 140.2 203 39.9
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 9.2e-31 139.8 181 44.2
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.6e-30 139.0 141 51.8
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.1e-30 138.7 199 42.2
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.7e-30 138.3 196 39.8
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 2.7e-30 138.3 180 47.8
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 3.5e-30 137.9 213 41.8
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 3.5e-30 137.9 181 44.8
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 4.6e-30 137.5 156 49.4
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 4.6e-30 137.5 142 50.7
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 6.0e-30 137.1 141 51.8
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.7e-29 135.6 180 44.4
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 3.9e-29 134.4 182 43.4
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 3.9e-29 134.4 132 53.8
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.1e-29 134.0 182 44.5
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 5.1e-29 134.0 145 49.7
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 5.1e-29 134.0 193 43.0
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 6.6e-29 133.7 180 46.7
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 8.6e-29 133.3 198 38.9
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.9e-28 132.1 205 37.6
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 5.6e-28 130.6 181 44.2
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.6e-28 130.6 196 38.8
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 5.6e-28 130.6 210 41.0
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.1e-27 128.6 144 50.7
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.4e-26 125.9 181 39.2
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.4e-26 125.9 184 41.3
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.4e-26 125.9 186 41.9
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.8e-26 125.6 182 43.4
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 7.6e-25 120.2 128 50.0
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.7e-24 119.0 152 38.2
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.7e-24 119.0 183 40.4
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.7e-24 117.9 138 42.8
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 6.4e-24 117.1 191 36.1
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 8.4e-24 116.7 139 41.7
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.4e-23 115.9 180 38.3
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.4e-23 115.9 184 38.6
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.4e-23 115.9 183 39.9
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.9e-23 115.5 180 38.3
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 3.2e-23 114.8 208 35.6
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 4.1e-23 114.4 138 47.8
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 5.4e-23 114.0 187 39.0
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.2e-22 112.8 147 44.2
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.6e-22 112.5 112 52.7
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 2.1e-22 112.1 208 37.5
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 2.7e-22 111.7 148 45.9
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 4.6e-22 110.9 173 36.4
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 6.0e-22 110.5 140 41.4
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 7.8e-22 110.2 140 42.1
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.3e-21 109.4 145 42.1
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.3e-21 108.6 162 39.5
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 1.9e-20 105.5 207 33.8
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 5.6e-20 104.0 138 39.9
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.6e-20 104.0 95 56.8
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 1.2e-19 102.8 170 38.8
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 4.7e-19 100.9 159 39.6
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 8.1e-19 100.1 160 38.8
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 8.1e-19 100.1 160 38.8
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 8.1e-19 100.1 160 38.8
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.4e-18 99.4 145 40.7
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.8e-18 99.0 165 38.8
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 3.1e-18 98.2 166 34.3
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 6.8e-18 97.1 169 37.3
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 4.4e-17 94.4 205 33.2
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 4.4e-17 94.4 165 37.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.7e-16 92.4 77 55.8
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 1.1e-15 89.7 165 35.2
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.4e-15 89.4 159 34.6
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 2.5e-12 78.6 160 31.9
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.3e-11 76.3 166 34.3
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 2.1e-11 75.5 187 32.1
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.8e-11 74.3 80 48.8
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.4e-10 72.0 81 45.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.0e-10 71.2 138 35.5
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 6.9e-10 70.5 84 42.9
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.6e-09 68.6 75 45.3
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 3.4e-09 68.2 135 31.1
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.4e-09 68.2 138 34.1
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 4.5e-09 67.8 168 27.4
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 4.5e-09 67.8 175 28.6
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 1.3e-08 66.2 70 48.6
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 4.9e-08 64.3 92 42.4
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 6.4e-08 63.9 74 43.2
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 8.4e-08 63.5 83 43.4
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 1.1e-07 63.2 136 30.9
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.1e-07 63.2 92 39.1
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 1.9e-07 62.4 194 25.8
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.4e-07 62.0 188 27.7
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 2.4e-07 62.0 187 26.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 3.2e-07 61.6 157 27.4
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 4.2e-07 61.2 155 29.7
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 5.4e-07 60.8 118 30.5
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 5.4e-07 60.8 118 30.5
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 7.1e-07 60.5 78 37.2
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 9.3e-07 60.1 111 28.8
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.2e-06 59.7 74 40.5
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 1.2e-06 59.7 136 27.9
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.6e-06 59.3 58 41.4
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 1.6e-06 59.3 83 38.6
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 1.6e-06 59.3 87 40.2
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 1.6e-06 59.3 133 28.6
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 2.1e-06 58.9 97 36.1
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 3.5e-06 58.2 58 43.1
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 3.5e-06 58.2 137 29.2
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 4.6e-06 57.8 119 31.1
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 6.0e-06 57.4 149 29.5
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 7.9e-06 57.0 171 29.2


User provided reference genes

Program Settings