Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.8e-176 622.5 310 100.0
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.5e-138 495.7 307 76.9
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 2.1e-137 492.7 307 76.9
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.1e-137 492.7 312 76.6
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 1.1e-136 490.3 307 75.9
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 9.9e-135 483.8 306 75.2
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.2e-134 482.6 310 74.5
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 2.2e-134 482.6 303 74.6
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 3.8e-134 481.9 310 73.9
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 4.9e-134 481.5 310 74.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 8.4e-134 480.7 307 76.2
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.1e-133 480.3 307 75.9
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.1e-133 480.3 305 74.4
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.9e-133 479.6 307 73.6
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 4.2e-133 478.4 307 75.2
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 7.1e-133 477.6 311 74.6
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.7e-132 475.7 307 75.2
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 4.6e-132 474.9 309 74.1
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 4.6e-132 474.9 310 74.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 4.6e-132 474.9 310 72.9
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 7.8e-132 474.2 310 73.5
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 1.7e-131 473.0 306 74.2
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 2.3e-131 472.6 310 72.9
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 3.9e-131 471.9 305 73.4
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 3.9e-131 471.9 308 73.4
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 5.1e-131 471.5 305 74.4
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 5.1e-131 471.5 307 73.9
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 5.1e-131 471.5 307 74.3
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 5.1e-131 471.5 307 73.3
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 1.1e-130 470.3 306 74.5
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.3e-129 466.8 310 71.6
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.1e-128 463.8 313 71.6
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-128 463.8 305 73.8
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-128 463.8 305 73.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 1.4e-128 463.4 305 72.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.8e-128 463.0 308 71.8
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 9.0e-128 460.7 307 73.0
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.6e-127 459.1 308 71.1
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.4e-127 458.8 307 72.0
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 5.8e-127 458.0 321 69.5
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.8e-127 458.0 310 71.3
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.9e-127 457.2 306 72.9
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 9.9e-127 457.2 305 70.5
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 1.3e-126 456.8 303 72.9
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 8.4e-126 454.1 349 64.2
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 2.4e-125 452.6 311 70.1
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 3.2e-125 452.2 308 71.1
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 4.2e-125 451.8 307 72.0
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 9.3e-125 450.7 307 72.0
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 6.0e-124 448.0 306 69.0
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 7.9e-124 447.6 307 70.0
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 1.8e-123 446.4 301 73.4
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 3.0e-123 445.7 307 70.7
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 5.1e-123 444.9 307 69.7
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 1.1e-122 443.7 306 71.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 1.1e-122 443.7 311 69.1
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.1e-122 443.7 306 71.6
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.5e-122 443.4 307 69.4
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 3.3e-122 442.2 307 69.1
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 5.6e-122 441.4 304 70.1
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 5.6e-122 441.4 307 69.4
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.1e-121 439.5 306 70.6
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 2.8e-121 439.1 305 68.9
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 6.2e-121 438.0 305 68.9
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 6.2e-121 438.0 311 67.8
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 6.2e-121 438.0 311 67.8
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 8.1e-121 437.6 315 68.9
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.1e-121 437.6 307 67.4
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.4e-120 436.8 305 68.5
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 1.4e-120 436.8 304 69.1
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.8e-120 436.4 311 67.2
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 2.4e-120 436.0 306 70.6
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 2.4e-120 436.0 301 71.1
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 4.0e-120 435.3 304 68.8
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 5.3e-120 434.9 306 67.6
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 5.3e-120 434.9 307 67.4
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 5.3e-120 434.9 307 67.4
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 4.5e-119 431.8 383 58.2
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.5e-119 431.8 310 68.1
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 4.5e-119 431.8 316 67.7
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.3e-118 430.3 307 69.1
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.2e-118 429.5 328 64.3
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 1.1e-117 427.2 277 73.3
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.1e-117 427.2 306 68.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.1e-117 427.2 285 71.6
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 4.2e-117 425.2 306 67.0
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.6e-116 423.3 305 67.9
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 3.5e-116 422.2 306 68.0
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 7.9e-116 421.0 314 64.3
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 2.3e-115 419.5 329 62.0
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 2.5e-114 416.0 308 66.9
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 4.8e-113 411.8 350 60.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 5.3e-112 408.3 306 65.7
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.5e-111 406.8 306 63.4
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.7e-110 403.3 300 65.3
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 6.5e-110 401.4 307 67.1
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.1e-108 396.4 284 68.3
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.4e-101 373.6 244 72.1
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 5.5e-101 371.7 308 62.0
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 1.0e-99 367.5 245 71.0
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.1e-98 364.0 240 73.3
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.1e-98 364.0 261 67.8
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 9.1e-96 354.4 306 59.2
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 2.2e-94 349.7 306 58.8
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 2.1e-92 343.2 241 68.0
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 6.5e-86 321.6 209 72.2
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.2e-84 317.4 300 53.0
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 1.5e-82 310.5 211 68.2
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.7e-81 307.0 296 52.0
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 7.7e-79 298.1 296 50.7
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.5e-77 293.9 305 51.1
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 3.0e-67 259.6 291 45.7
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.9e-57 225.7 147 72.8
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 7.0e-56 221.9 181 57.5
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.7e-54 217.2 145 72.4
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.9e-54 216.5 290 40.7
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.5e-50 204.1 158 61.4
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.6e-50 203.4 318 39.3
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 2.3e-38 163.7 185 51.4
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 3.3e-37 159.8 149 53.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 5.2e-35 152.5 149 55.0
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 3.0e-30 136.7 96 67.7
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-29 132.5 97 66.0
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.9e-27 125.2 144 46.5
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-21 108.2 66 74.2
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 5.2e-19 99.4 59 78.0
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.4e-17 92.4 71 54.9
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.6e-14 82.4 66 60.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 5.6e-13 79.3 64 60.9


User provided reference genes

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