Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1576.6 805 100.0
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1246.5 770 80.5
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1234.6 774 80.0
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1233.8 771 80.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1233.4 771 79.8
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1222.6 769 79.6
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 773 77.9
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 768 79.6
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1220.7 772 79.9
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1218.8 776 78.6
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1217.2 772 79.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1216.8 767 79.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1216.4 769 79.6
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1210.3 772 79.3
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1208.7 772 78.6
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1207.2 772 80.3
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1202.2 800 76.5
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1198.3 772 77.3
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1194.9 770 76.4
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1193.3 773 77.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 768 76.2
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1184.1 775 76.3
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1181.0 770 75.2
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1177.5 765 77.4
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1177.2 778 75.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1174.5 770 77.0
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1169.8 772 76.3
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1167.1 770 76.1
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1166.8 778 75.3
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 773 76.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1160.2 772 76.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1159.1 773 75.8
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1156.4 773 75.7
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1154.8 765 75.6
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 731 78.8
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1150.6 742 75.9
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1141.7 768 74.0
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1139.4 772 74.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1136.3 771 73.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1134.8 851 69.7
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1134.4 772 74.1
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1133.2 787 72.4
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1132.5 782 73.0
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1131.7 775 73.7
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 769 73.2
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1127.9 770 73.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 773 73.6
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1122.5 765 73.1
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 774 73.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1114.0 774 73.3
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 770 72.5
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1108.6 874 67.2
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1106.7 704 78.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1106.7 776 70.9
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1105.5 769 72.2
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1104.4 773 73.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1103.6 770 71.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 772 71.5
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1102.8 777 71.9
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1102.4 774 74.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1102.0 772 71.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1102.0 775 71.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1101.3 765 71.4
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 765 71.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1099.3 778 71.1
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1098.2 768 71.6
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 772 71.2
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1097.4 771 72.1
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1096.3 774 70.5
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1095.1 770 71.8
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1094.7 771 72.2
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1092.4 776 71.3
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1091.3 772 71.6
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1085.1 802 68.6
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 737 72.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 783 69.2
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1078.2 768 71.4
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1077.8 772 70.9
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 5.5e-312 1074.7 752 72.6
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 5.5e-312 1073.5 771 70.2
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 5.5e-312 1073.5 771 70.2
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 2.4e-310 1068.5 681 79.3
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.2e-309 1066.2 770 69.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.3e-308 1062.8 788 69.9
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.8e-306 1054.3 771 68.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 4.0e-305 1051.2 854 65.6
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 3.4e-304 1048.1 774 69.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.5e-304 1047.7 769 68.3
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 7.6e-304 1047.0 770 68.1
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 7.6e-304 1047.0 790 67.5
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 2.2e-303 1045.4 902 63.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 2.4e-302 1042.0 743 70.4
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 9.3e-302 1040.0 770 67.9
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 3.5e-301 1038.1 769 67.2
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 4.6e-301 1037.7 821 66.4
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.3e-300 1036.2 771 67.6
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.3e-300 1036.2 771 67.6
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.6e-298 1029.2 771 67.7
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.6e-298 1029.2 771 67.7
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 4.0e-297 1024.6 771 67.4
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-295 1019.6 719 70.9
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.7e-295 1019.2 773 66.8
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 6.5e-295 1017.3 769 69.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 4.2e-294 1014.6 769 67.0
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.0e-284 983.4 717 69.6
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.2e-279 965.7 703 68.4
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.3e-276 955.7 771 63.7
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 9.1e-273 943.7 735 65.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.6e-269 932.9 780 60.8
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.4e-267 924.1 767 63.2
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.6e-264 916.4 766 63.4
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 4.2e-262 908.3 780 60.1
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 5.5e-262 907.9 668 68.4
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.1e-249 867.1 534 81.1
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.9e-238 829.7 610 70.0
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.9e-238 829.7 776 59.9
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.3e-220 769.6 807 51.8
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.9e-214 750.0 768 53.8
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.3e-214 748.8 541 70.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 9.6e-198 694.5 791 48.2
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.6e-197 693.7 791 48.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.9e-193 680.2 789 48.5
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.3e-186 657.5 391 82.1
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 9.3e-185 651.4 755 49.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 4.6e-176 622.5 470 67.7
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.0e-163 580.5 457 68.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 3.8e-162 576.2 371 77.9
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.7e-160 570.1 466 62.2
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.3e-159 567.0 391 72.9
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.1e-153 548.1 493 62.5
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 8.0e-152 542.0 780 42.4
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.8e-148 530.8 473 60.7
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 5.5e-137 492.7 303 80.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.7e-122 444.5 676 42.9
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-121 441.8 384 58.9
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.6e-120 436.8 366 63.4
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.2e-118 431.8 287 75.6
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.1e-111 408.7 394 57.4
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 2.6e-102 377.5 231 77.5
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 2.8e-96 357.5 225 77.3
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 8.9e-95 352.4 233 73.0
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.2e-94 352.1 224 75.9
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.6e-91 341.7 290 60.0
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.3e-89 334.0 204 79.9
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-86 325.1 248 66.9
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.8e-72 277.7 173 75.1
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.1e-63 247.7 239 58.6
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.7e-61 241.9 185 64.3
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.9e-60 238.4 156 77.6
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.4e-52 212.2 130 80.8
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.3e-50 204.9 246 52.0
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.9e-44 185.3 491 29.9
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 8.2e-32 143.3 72 98.6
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.4e-31 142.5 128 63.3
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.1e-28 132.9 107 64.5
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.9e-28 132.1 133 54.9
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 9.4e-20 103.2 67 73.1
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.1e-19 102.1 75 68.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 4.1e-15 87.8 95 50.5
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.3e-08 66.2 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 1.3e-08 66.2 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 1.3e-08 66.2 35 80.0
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.8e-06 57.0 133 33.8


User provided reference genes

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