Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 2.8e-61 238.4 119 100.0
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.6e-37 159.5 115 71.3
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-36 156.8 113 73.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 8.7e-23 110.5 118 59.3
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.5e-22 109.8 115 54.8
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.5e-22 109.8 117 54.7
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.3e-21 106.7 114 55.3
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.1e-20 103.6 119 48.7
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-19 100.1 102 51.0
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.2e-19 100.1 106 52.8
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.4e-19 98.6 123 50.4
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.4e-19 98.6 100 56.0
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 5.9e-19 97.8 116 50.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.0e-18 97.1 120 50.0
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 3.8e-18 95.1 121 48.8
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.8e-18 95.1 109 54.1
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 5.0e-18 94.7 116 52.6
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 6.5e-18 94.4 116 49.1
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.5e-18 94.4 116 50.9
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.5e-18 94.4 116 49.1
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.5e-18 94.4 116 49.1
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 8.5e-18 94.0 115 47.8
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 1.1e-17 93.6 125 48.0
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.1e-17 93.6 120 47.5
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.1e-17 93.6 126 43.7
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.1e-17 93.6 117 48.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.4e-17 93.2 115 47.8
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.9e-17 92.8 115 44.3
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.5e-17 92.4 113 52.2
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.2e-17 92.0 101 51.5
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 5.5e-17 91.3 124 47.6
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.4e-17 90.5 116 50.0
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.4e-17 90.5 103 50.5
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-16 90.1 115 43.5
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.2e-16 90.1 115 43.5
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.1e-16 89.4 121 45.5
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.1e-16 89.4 103 50.5
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 2.7e-16 89.0 129 45.7
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.6e-16 88.6 130 46.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 4.6e-16 88.2 121 44.6
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.6e-16 88.2 117 45.3
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 6.1e-16 87.8 124 48.4
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 6.1e-16 87.8 115 42.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.1e-16 87.8 117 44.4
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.1e-16 87.8 115 44.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.9e-16 87.4 106 51.9
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.9e-16 87.4 106 49.1
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.0e-15 87.0 126 42.1
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.8e-15 86.3 111 46.8
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.8e-15 86.3 128 45.3
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.3e-15 85.9 124 48.4
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 3.0e-15 85.5 115 48.7
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 5.1e-15 84.7 71 64.8
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 6.7e-15 84.3 111 45.0
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 8.8e-15 84.0 119 41.2
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 4.3e-14 81.6 111 45.0
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 5.7e-14 81.3 116 46.6
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.7e-13 79.7 119 43.7
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.7e-13 78.6 103 46.6
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 8.2e-13 77.4 122 38.5
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.1e-12 77.0 125 43.2
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.1e-12 77.0 81 48.1
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.1e-12 77.0 133 42.1
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.4e-12 76.6 85 48.2
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.4e-12 76.6 133 42.1
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.4e-12 76.6 119 40.3
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.8e-12 76.3 121 44.6
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.8e-12 76.3 106 46.2
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.4e-12 75.9 123 38.2
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.1e-12 75.5 57 59.6
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 4.1e-12 75.1 117 45.3
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.1e-12 75.1 77 54.5
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.1e-12 75.1 101 44.6
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 4.1e-12 75.1 94 47.9
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 6.9e-12 74.3 112 38.4
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 6.9e-12 74.3 119 42.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 6.9e-12 74.3 119 42.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 9.1e-12 73.9 134 35.1
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 9.1e-12 73.9 114 43.0
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.2e-11 73.6 60 66.7
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 2.6e-11 72.4 65 56.9
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 2.6e-11 72.4 114 41.2
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 4.5e-11 71.6 95 48.4
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.5e-11 71.6 83 54.2
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.5e-11 71.6 116 34.5
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 4.5e-11 71.6 75 45.3
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 4.5e-11 71.6 114 43.9
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.9e-11 71.2 116 34.5
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.9e-11 71.2 101 47.5
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-11 70.9 116 34.5
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.3e-10 70.1 132 40.2
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.3e-10 70.1 121 39.7
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.3e-10 70.1 118 40.7
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.7e-10 69.7 121 40.5
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.7e-10 69.7 67 46.3
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.7e-10 69.7 76 48.7
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-10 69.7 122 38.5
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.9e-10 68.9 83 45.8
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.8e-10 68.6 117 41.9
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.0e-10 68.2 84 46.4
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 5.0e-10 68.2 60 53.3
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 5.0e-10 68.2 72 48.6
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 6.5e-10 67.8 60 51.7
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 8.5e-10 67.4 103 41.7
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 8.5e-10 67.4 60 51.7
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-09 67.0 69 55.1
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-09 67.0 83 47.0
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.1e-09 67.0 60 51.7
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.4e-09 66.6 79 49.4
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.4e-09 66.6 97 47.4
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.5e-09 65.9 97 42.3
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 3.2e-09 65.5 63 47.6
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 3.2e-09 65.5 140 35.0
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 4.2e-09 65.1 91 44.0
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 4.2e-09 65.1 93 44.1
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 4.2e-09 65.1 108 42.6
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.5e-09 64.7 75 45.3
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.2e-09 64.3 78 50.0
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.2e-09 64.3 75 48.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 7.2e-09 64.3 76 50.0
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-08 63.5 78 50.0
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.2e-08 63.5 73 52.1
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 1.6e-08 63.2 114 37.7
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 2.1e-08 62.8 117 42.7
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.1e-08 62.8 93 45.2
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.1e-08 62.8 79 53.2
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 2.1e-08 62.8 81 45.7
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.7e-08 62.4 79 48.1
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 3.6e-08 62.0 116 39.7
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 6.1e-08 61.2 67 50.7
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 6.1e-08 61.2 85 45.9
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.4e-07 60.1 120 37.5
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 3.0e-07 58.9 123 35.8
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.1e-07 58.2 91 42.9
ATR0998G003 Amborella trichopoda HOM05D018057 ORTHO05D004438 6.7e-07 57.8 68 50.0
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 8.8e-07 57.4 74 47.3
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-06 57.0 74 44.6
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 1.5e-06 56.6 109 37.6
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-06 56.6 61 54.1
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-06 56.6 60 51.7
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.5e-06 56.6 67 43.3
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.3e-06 55.5 68 50.0
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 5.7e-06 54.7 137 38.7
SEGI_05316 Sequoiadendron giganteum HOM05D018057 ORTHO05D004438 9.7e-06 53.9 59 54.2


User provided reference genes

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