Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.1e-147 526.6 267 100.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 4.1e-105 385.2 271 73.4
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.3e-90 337.0 259 66.0
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.9e-90 335.9 271 66.1
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.2e-89 330.9 268 64.6
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 9.2e-89 330.9 271 66.8
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 5.1e-87 325.1 257 65.8
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.1e-85 317.8 258 64.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.1e-84 315.8 258 64.0
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.2e-83 313.9 267 62.9
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.6e-83 312.8 265 62.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 9.9e-83 310.8 271 63.1
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.2e-82 309.7 274 59.9
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.8e-82 308.9 271 60.1
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.4e-82 308.1 259 62.2
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 8.4e-82 307.8 259 61.0
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.9e-81 306.6 276 59.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.9e-79 298.9 279 59.1
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.9e-79 298.9 268 59.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 3.9e-79 298.9 257 59.9
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 6.6e-79 298.1 268 60.8
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 6.6e-79 298.1 252 59.5
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.6e-79 298.1 252 59.5
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.6e-79 298.1 252 59.5
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-78 296.6 260 58.8
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-78 296.6 260 58.5
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.3e-78 295.8 260 58.8
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.3e-78 295.4 259 61.4
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.3e-77 293.9 267 59.9
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.3e-77 293.9 256 59.4
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.3e-77 293.9 257 59.9
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.8e-77 292.7 252 58.7
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 8.1e-77 291.2 259 58.7
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.4e-76 289.7 258 61.2
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.0e-75 286.6 260 59.6
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 4.4e-75 285.4 255 59.6
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 7.6e-75 284.6 271 56.5
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.8e-74 282.3 258 60.1
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 9.3e-73 277.7 257 56.0
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.5e-72 275.8 220 64.1
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 6.0e-72 275.0 260 56.9
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 6.0e-72 275.0 268 56.3
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.9e-72 274.6 239 62.3
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.0e-71 274.2 220 63.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 5.1e-71 271.9 257 57.6
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.9e-70 270.0 274 56.6
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.5e-70 269.6 258 56.6
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.3e-69 267.3 273 56.8
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.3e-69 267.3 262 56.1
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 6.2e-69 265.0 267 56.9
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.1e-69 264.6 262 54.2
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.0e-68 262.3 262 53.4
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.4e-67 259.2 258 55.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.5e-67 258.8 261 54.4
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.3e-66 257.3 258 54.3
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.7e-66 256.9 262 52.3
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.2e-66 256.5 262 56.5
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.8e-66 255.8 262 52.3
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.1e-65 254.2 218 61.9
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 1.1e-65 254.2 264 53.8
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.9e-65 253.4 255 54.9
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 5.5e-65 251.9 255 54.5
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 5.5e-65 251.9 262 51.9
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 9.3e-65 251.1 257 53.7
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.2e-64 250.8 255 53.3
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.1e-64 250.0 269 52.0
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.0e-63 247.7 262 51.5
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 3.0e-63 246.1 252 54.4
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.1e-61 240.0 268 49.6
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.8e-61 239.6 259 49.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.7e-61 239.2 260 50.0
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.8e-61 238.8 262 51.1
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.1e-60 237.7 170 66.5
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.0e-60 235.7 276 47.5
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.0e-60 235.7 276 47.5
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 5.3e-60 235.3 258 52.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 6.9e-60 235.0 255 54.1
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.6e-59 233.0 261 49.8
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.7e-58 230.3 254 51.6
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.9e-58 229.6 259 49.8
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.4e-57 227.3 263 48.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.9e-57 226.9 258 48.8
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.2e-57 226.1 262 50.0
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.2e-57 226.1 262 50.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 5.5e-57 225.3 262 51.9
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 7.1e-57 224.9 260 47.3
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 7.1e-57 224.9 257 48.2
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 7.1e-57 224.9 262 51.9
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 4.6e-56 222.2 258 51.6
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.0e-55 221.1 259 48.3
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.1e-55 218.8 253 49.8
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.7e-55 218.4 203 53.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.1e-54 217.6 261 48.7
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.1e-54 217.6 249 49.8
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.5e-54 216.5 254 47.2
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.5e-54 216.5 202 53.0
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 3.3e-54 216.1 253 50.6
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 7.4e-54 214.9 257 50.2
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 3.7e-53 212.6 260 47.7
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.4e-52 209.9 258 46.1
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 3.1e-52 209.5 266 47.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 5.3e-52 208.8 254 47.6
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 9.0e-52 208.0 255 46.3
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.6e-51 206.5 253 47.0
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 4.5e-51 205.7 260 45.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 7.6e-51 204.9 260 44.2
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 7.6e-51 204.9 260 45.8
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.2e-50 203.4 261 45.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 2.2e-50 203.4 263 46.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 8.4e-50 201.4 267 46.8
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-49 199.9 199 50.8
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 4.2e-49 199.1 260 44.2
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 7.2e-49 198.4 260 45.4
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 7.2e-49 198.4 264 44.3
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.7e-48 196.4 260 44.2
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.7e-48 196.4 260 44.2
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 6.1e-48 195.3 260 45.4
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 6.1e-48 195.3 267 43.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.0e-47 194.5 262 43.9
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.3e-47 194.1 202 50.0
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.1e-47 192.2 259 45.2
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.5e-46 190.7 173 53.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.5e-46 190.7 173 53.8
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 3.3e-46 189.5 259 44.4
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.8e-45 186.4 259 43.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.8e-45 186.4 258 45.0
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.7e-45 186.0 260 42.7
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 4.1e-44 182.6 261 45.2
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 5.3e-44 182.2 265 41.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.0e-44 181.4 195 47.7
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 9.0e-44 181.4 219 44.7
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.7e-42 177.2 284 39.8
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 6.5e-42 175.3 257 43.2
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 6.5e-42 175.3 253 41.9
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.5e-42 174.9 208 50.0
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 3.2e-41 172.9 215 47.0
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-40 171.0 116 67.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.6e-40 169.5 150 55.3
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 3.0e-39 166.4 117 67.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 6.7e-39 165.2 257 40.9
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 7.4e-38 161.8 158 48.7
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 6.3e-37 158.7 256 38.3
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.1e-36 156.4 99 75.8
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.5e-35 154.1 198 49.5
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.2e-32 144.4 122 55.7
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.3e-31 140.2 128 52.3
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.1e-30 137.9 159 50.3
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 2.1e-24 117.1 115 47.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.8e-21 106.7 111 46.8
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-19 101.3 82 59.8
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 2.0e-14 84.0 98 40.8
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 9.8e-14 81.6 95 41.1
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.3e-13 81.3 262 27.9
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 3.7e-13 79.7 283 25.8
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 6.3e-13 79.0 184 30.4
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.1e-12 78.2 76 50.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.4e-12 77.8 209 29.7


User provided reference genes

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