Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 1.9e-44 182.2 96 100.0
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 3.0e-21 105.1 95 61.1
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 8.6e-21 103.6 98 63.3
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 3.3e-20 101.7 97 57.7
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 9.5e-20 100.1 97 57.7
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 1.2e-19 99.8 98 57.1
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 4.7e-19 97.8 98 59.2
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 1.1e-18 96.7 94 57.4
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 4.0e-18 94.7 94 61.7
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.2e-17 93.2 95 55.8
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 1.5e-17 92.8 83 57.8
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 2.0e-17 92.4 99 56.6
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 2.6e-17 92.0 81 59.3
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 3.4e-17 91.7 83 59.0
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 5.8e-17 90.9 97 54.6
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 5.8e-17 90.9 81 58.0
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 3.7e-16 88.2 106 50.0
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 7.1e-15 84.0 90 52.2
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 1.2e-14 83.2 93 47.3
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 2.1e-14 82.4 91 56.0
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 7.8e-14 80.5 102 53.9
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 1.7e-13 79.3 89 51.7
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 3.0e-13 78.6 95 48.4
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 5.1e-13 77.8 95 48.4
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 8.6e-13 77.0 83 48.2
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 8.6e-13 77.0 82 50.0
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 1.1e-12 76.6 92 54.3
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 1.1e-12 76.6 98 50.0
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 1.1e-12 76.6 91 48.4
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 1.9e-12 75.9 85 49.4
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 1.9e-12 75.9 110 46.4
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 3.3e-12 75.1 102 50.0
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 3.3e-12 75.1 95 47.4
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 7.3e-12 73.9 100 50.0
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.6e-11 72.8 94 45.7
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 2.8e-11 72.0 83 47.0
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 4.7e-11 71.2 98 48.0
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 4.7e-11 71.2 95 49.5
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 4.7e-11 71.2 83 45.8
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 1.1e-10 70.1 98 45.9
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 4.0e-10 68.2 81 49.4
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 5.8e-09 64.3 94 47.9
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 7.6e-09 63.9 84 41.7
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 9.9e-09 63.5 106 44.3
Sabra17G0123100 Salix brachista HOM05D008287 ORTHO05D010110 1.7e-08 62.8 50 68.0
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 2.2e-08 62.4 96 47.9
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 2.9e-08 62.0 34 76.5
CARHR286230 Cardamine hirsuta HOM05D013386 ORTHO05D010110 3.8e-08 61.6 94 46.8
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 3.8e-08 61.6 92 37.0
Carub.0008s0883 Capsella rubella HOM05D013386 ORTHO05D010110 8.4e-08 60.5 96 49.0
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 8.4e-08 60.5 52 59.6
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.4e-07 59.7 52 59.6
PGR142G4013 Punica granatum HOM05D008287 ORTHO05D010110 1.4e-07 59.7 107 32.7
arahy.Tifrunner.gnm1.ann1.7IIA7U Arachis hypogaea HOM05D008287 ORTHO05D010110 3.2e-07 58.5 94 40.4
arahy.Tifrunner.gnm1.ann1.LAB5TB Arachis hypogaea HOM05D008287 ORTHO05D010110 3.2e-07 58.5 94 40.4
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 3.2e-07 58.5 47 61.7
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 3.2e-07 58.5 47 61.7
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 5.4e-07 57.8 32 75.0
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 7.1e-07 57.4 32 75.0
Medtr6g033505 Medicago truncatula HOM05D008287 ORTHO05D010110 7.1e-07 57.4 92 39.1
Eucgr.G02829 Eucalyptus grandis HOM05D055458 ORTHO05D010110 9.3e-07 57.0 93 39.8
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 9.3e-07 57.0 47 66.0
Thhalv10005354m.g Eutrema salsugineum HOM05D013386 ORTHO05D010110 1.2e-06 56.6 96 42.7
FAN03G0373 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.2e-06 56.6 47 66.0
Aa31sc101G40 Aethionema arabicum HOM05D013386 ORTHO05D010110 1.6e-06 56.2 81 40.7
Lsat_1_v5_gn_2_114761 Lactuca sativa HOM05D008287 ORTHO05D010110 3.5e-06 55.1 81 35.8


User provided reference genes

Program Settings