Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 5.7e-76 287.7 171 100.0
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.6e-57 226.5 175 73.1
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.3e-56 222.6 172 69.2
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 9.5e-55 217.2 174 70.1
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.8e-54 215.7 172 68.6
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.8e-54 215.7 174 67.8
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 5.2e-53 211.5 178 77.0
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 8.9e-53 210.7 167 67.1
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 4.4e-52 208.4 172 77.3
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 4.4e-52 208.4 172 67.4
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.8e-52 208.0 179 71.5
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.2e-50 202.2 170 64.1
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 4.1e-50 201.8 179 73.2
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 4.1e-50 201.8 179 73.2
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.2e-49 200.3 179 72.6
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-49 200.3 173 74.6
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.2e-49 200.3 171 64.9
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.6e-49 199.9 168 64.9
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 7.8e-49 197.6 178 73.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.3e-48 196.8 171 60.8
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.7e-48 196.4 183 61.7
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 2.3e-48 196.1 171 65.5
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.3e-48 196.1 171 63.7
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 3.9e-48 195.3 171 62.0
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.5e-47 193.4 165 65.5
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.9e-47 193.0 167 74.3
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.9e-47 193.0 171 60.2
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 2.5e-47 192.6 169 61.5
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.3e-47 191.8 166 63.9
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 7.3e-47 191.0 158 75.9
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.2e-46 190.3 169 60.4
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-46 190.3 176 60.8
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.6e-46 189.9 178 61.8
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 3.6e-46 188.7 175 57.7
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 4.7e-46 188.3 182 59.9
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 8.1e-46 187.6 178 60.7
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 8.1e-46 187.6 171 71.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 1.1e-45 187.2 169 59.8
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.4e-45 186.8 178 60.7
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-45 186.8 176 59.7
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.4e-45 186.8 181 65.2
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.8e-45 186.4 178 62.9
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 5.2e-45 184.9 177 59.3
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 8.9e-45 184.1 168 73.2
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.2e-44 183.7 165 62.4
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.5e-44 183.3 169 58.6
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.4e-44 181.8 171 66.1
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.3e-43 180.3 185 57.3
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.7e-43 179.9 177 59.3
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 4.9e-43 178.3 169 71.0
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.9e-43 178.3 172 66.3
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 8.4e-43 177.6 171 63.2
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 8.4e-43 177.6 172 69.2
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 2.4e-42 176.0 170 58.8
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.2e-42 175.6 171 56.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 4.2e-42 175.3 167 71.3
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 5.4e-42 174.9 151 75.5
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 9.3e-42 174.1 172 56.4
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.2e-41 173.7 171 56.1
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.1e-41 172.9 181 64.6
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.5e-41 172.2 171 59.6
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 3.5e-41 172.2 169 59.2
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.6e-41 171.8 163 63.8
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.8e-41 171.0 173 55.5
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 7.8e-41 171.0 182 65.9
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.3e-40 170.2 175 55.4
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.3e-40 170.2 171 63.2
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.7e-40 169.9 163 54.6
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.3e-40 169.5 172 54.7
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.3e-40 169.5 186 65.1
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 3.9e-40 168.7 164 59.1
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 5.1e-40 168.3 164 64.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 6.6e-40 167.9 164 54.9
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.5e-39 166.8 174 56.3
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-39 166.4 172 54.1
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-39 166.4 172 54.1
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.9e-39 166.4 164 66.5
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 2.5e-39 166.0 171 63.2
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.3e-39 165.6 169 53.8
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.3e-39 165.6 164 66.5
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 4.3e-39 165.2 172 53.5
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 4.3e-39 165.2 167 53.3
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 5.6e-39 164.9 173 54.3
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 9.6e-39 164.1 174 54.0
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.3e-38 163.7 175 53.1
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.8e-38 162.5 171 54.4
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.8e-38 162.5 158 54.4
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 3.6e-38 162.2 159 67.3
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 8.1e-38 161.0 169 52.7
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 4.0e-37 158.7 155 69.7
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 5.3e-37 158.3 178 53.9
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 6.9e-37 157.9 160 67.5
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 9.0e-37 157.5 166 66.3
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-36 157.1 242 44.6
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.5e-36 156.8 171 62.6
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 2.6e-36 156.0 164 61.6
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 3.4e-36 155.6 125 77.6
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 2.9e-35 152.5 167 54.5
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 3.8e-35 152.1 169 52.7
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.4e-35 151.0 117 69.2
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.2e-33 147.1 106 70.8
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 3.5e-33 145.6 171 52.0
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.3e-32 142.9 168 49.4
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.3e-32 142.9 112 69.6
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 3.0e-32 142.5 103 68.0
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 3.9e-32 142.1 168 56.5
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.1e-31 140.6 181 57.5
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 2.5e-31 139.4 175 56.0
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 4.3e-31 138.7 119 59.7
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 7.3e-31 137.9 171 58.5
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.6e-30 136.7 165 48.5
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 4.8e-30 135.2 106 78.3
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 5.3e-29 131.7 182 51.6
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 9.0e-29 131.0 176 47.2
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.2e-28 130.6 104 66.3
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 2.0e-28 129.8 115 59.1
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.6e-28 129.4 175 41.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 3.4e-28 129.0 127 58.3
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.7e-27 126.7 132 53.0
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.4e-26 123.6 114 56.1
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 5.4e-26 121.7 108 63.0
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.8e-24 116.7 109 60.6
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 3.9e-24 115.5 106 70.8
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 5.1e-24 115.2 181 43.6
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.9e-23 113.2 106 69.8
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 3.3e-23 112.5 176 40.9
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 4.0e-21 105.5 106 50.9
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.8e-19 99.0 188 37.2
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-16 90.5 104 51.0
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.3e-16 90.5 104 51.0
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 3.0e-16 89.4 97 52.6
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 5.1e-16 88.6 80 60.0
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 9.6e-15 84.3 167 33.5
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.1e-13 79.3 76 56.6
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 7.9e-09 64.7 107 41.1
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 8.7e-08 61.2 131 36.6
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.5e-07 59.7 65 50.8
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 5.7e-07 58.5 62 45.2


User provided reference genes

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