Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.5e-210 736.1 424 100.0
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.8e-134 483.4 451 66.3
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.8e-134 483.4 460 65.9
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.3e-133 479.2 476 64.1
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 7.4e-133 478.0 464 62.7
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 4.1e-131 472.2 450 65.1
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.5e-130 470.3 462 62.1
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 5.9e-130 468.4 462 61.9
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.7e-129 466.8 462 61.3
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.0e-129 465.3 458 62.4
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.6e-127 460.3 424 64.6
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.1e-127 459.9 449 62.8
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.6e-127 459.1 446 63.9
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 8.0e-127 458.0 439 64.2
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.8e-126 456.8 438 64.4
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.7e-126 454.9 430 65.3
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.7e-126 454.9 439 63.8
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 8.8e-126 454.5 446 64.1
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 7.4e-125 451.4 431 64.0
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.3e-124 450.7 460 64.6
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.7e-124 450.3 454 63.2
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 7.7e-122 441.4 430 64.0
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.1e-120 437.6 428 63.8
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 3.2e-120 436.0 437 62.2
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 5.5e-120 435.3 442 62.4
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 9.4e-120 434.5 461 59.2
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.2e-119 434.1 421 64.8
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 1.6e-119 433.7 429 65.5
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.4e-118 430.6 437 62.2
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 3.0e-118 429.5 415 63.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 5.2e-118 428.7 400 65.5
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.2e-117 427.6 447 62.6
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.2e-117 427.6 456 59.9
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 7.5e-117 424.9 460 59.6
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.8e-115 420.2 448 60.9
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 9.1e-115 417.9 423 63.1
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 2.7e-114 416.4 429 62.2
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.3e-113 414.1 446 61.2
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.8e-113 412.5 436 61.2
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 2.5e-112 409.8 459 58.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 3.2e-112 409.5 438 60.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.4e-110 404.1 434 60.1
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 5.2e-110 402.1 448 57.1
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 7.5e-109 398.3 425 60.5
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 9.8e-109 397.9 460 57.0
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.7e-108 397.1 426 58.2
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.7e-108 397.1 453 58.7
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 2.2e-108 396.7 444 55.6
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 4.8e-108 395.6 466 56.2
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.8e-107 393.7 438 58.7
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 9.1e-107 391.3 487 52.8
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 3.5e-106 389.4 430 58.6
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.3e-105 387.5 424 58.3
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.7e-105 387.1 475 53.5
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 8.6e-105 384.8 426 57.0
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.5e-104 384.0 459 54.7
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.5e-104 384.0 421 58.9
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.9e-104 383.6 439 57.6
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 3.3e-104 382.9 428 56.5
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 3.3e-104 382.9 443 57.3
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 3.3e-104 382.9 443 57.3
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 4.2e-104 382.5 439 57.4
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 5.5e-104 382.1 422 59.0
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 7.2e-104 381.7 418 59.3
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.8e-103 379.8 424 57.1
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 6.8e-102 375.2 359 64.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 6.8e-102 375.2 360 64.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 2.6e-101 373.2 423 58.2
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 4.9e-100 369.0 658 43.5
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.4e-99 367.5 438 55.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 4.1e-99 365.9 414 56.3
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 4.1e-99 365.9 426 56.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 7.0e-99 365.2 449 55.0
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.0e-98 363.6 414 56.0
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.0e-97 361.3 412 56.1
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 2.5e-96 356.7 422 54.7
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 7.3e-96 355.1 424 53.8
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.1e-95 353.6 423 55.6
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 4.7e-95 352.4 273 75.1
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 8.9e-94 348.2 437 51.5
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.2e-93 347.8 340 64.4
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 4.4e-93 345.9 428 56.5
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 7.5e-93 345.1 460 53.9
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.1e-91 341.3 444 52.7
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.4e-91 340.1 418 54.8
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 4.6e-90 335.9 415 53.0
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 2.3e-89 333.6 421 55.1
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 4.3e-88 329.3 438 51.6
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 2.2e-84 317.0 438 48.4
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 6.4e-84 315.5 515 43.7
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 7.0e-83 312.0 459 51.2
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 5.1e-81 305.8 425 51.5
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 9.5e-80 301.6 335 57.6
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.8e-78 297.4 449 47.7
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 4.9e-76 289.3 358 52.5
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.4e-75 285.8 415 48.4
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.6e-74 284.3 427 46.1
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 4.6e-74 282.7 342 53.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 7.8e-74 282.0 435 47.6
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.5e-72 277.7 446 46.9
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.9e-72 277.3 299 62.5
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 3.0e-65 253.4 448 44.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 8.7e-65 251.9 256 63.3
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 3.0e-57 226.9 435 40.7
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.5e-56 223.8 208 65.4
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.1e-55 220.7 229 60.3
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 4.9e-52 209.5 372 44.9
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 5.4e-51 206.1 252 47.6
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 9.0e-46 188.7 486 38.5
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.6e-42 177.9 313 40.9
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 4.6e-42 176.4 319 41.7
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 6.7e-33 146.0 248 44.0
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 7.4e-32 142.5 419 32.9
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 5.3e-30 136.3 176 56.8
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 9.1e-22 109.0 168 48.2
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-21 108.6 169 48.5
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 7.7e-21 105.9 346 33.2
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.1e-19 102.1 172 49.4
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.2e-19 100.5 88 68.2
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.0e-16 91.3 59 86.4
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 9.7e-16 89.0 88 60.2
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 4.8e-15 86.7 88 59.1
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 7.0e-14 82.8 56 82.1
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.5e-13 80.1 160 37.5
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 5.0e-12 76.6 294 29.9
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.2e-10 72.0 141 40.4
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 3.6e-10 70.5 50 74.0
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 1.8e-09 68.2 86 51.2
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.8e-06 58.2 77 50.6


User provided reference genes

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