Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G043600 Manihot esculenta HOM05D003020 ORTHO05D003226 2.1e-133 479.2 266 100.0
Manes.07G102900 Manihot esculenta HOM05D003020 ORTHO05D003226 1.7e-66 256.9 270 55.9
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 3.5e-48 196.1 270 50.0
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 1.2e-40 171.0 270 44.8
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 3.0e-39 166.4 264 43.9
Sabra10G0168900 Salix brachista HOM05D003020 ORTHO05D003226 1.5e-35 154.1 256 43.4
Sabra16G0321600 Salix brachista HOM05D003020 ORTHO05D003226 2.2e-34 150.2 211 48.8
Manes.10G043500 Manihot esculenta HOM05D003020 ORTHO05D003226 3.8e-34 149.4 273 41.8
Sabra16G0323200 Salix brachista HOM05D003020 ORTHO05D003226 6.5e-34 148.7 205 49.8
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 3.2e-33 146.4 291 37.8
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 5.5e-33 145.6 242 40.9
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 1.2e-32 144.4 302 37.7
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.3e-31 140.2 267 40.1
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.7e-31 138.7 268 38.8
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 1.5e-30 137.5 267 39.7
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.3e-30 136.0 265 39.2
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 7.4e-30 135.2 264 38.6
Duzib106G1942 Durio zibethinus HOM05D003020 ORTHO05D003226 1.3e-29 134.4 267 36.0
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.3e-29 134.4 267 39.0
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 4.1e-28 129.4 254 37.8
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 6.9e-28 128.6 265 37.0
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 1.1e-25 121.3 266 36.5
Actinidia02961 Actinidia chinensis HOM05D003020 ORTHO05D003226 9.4e-25 118.2 239 36.0
Gohir.A06G178400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.7e-24 116.7 267 36.0
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 4.7e-24 115.9 251 36.7
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 1.4e-23 114.4 245 36.3
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.0e-23 113.2 245 36.3
Gorai.010G204300 Gossypium raimondii HOM05D003020 ORTHO05D003226 3.0e-23 113.2 268 34.3
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 5.1e-23 112.5 267 35.2
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 8.8e-23 111.7 243 35.0
Gohir.D06G174600 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.6e-22 110.2 268 34.0
Eucgr.J01114 Eucalyptus grandis HOM05D003020 ORTHO05D003226 4.4e-22 109.4 204 40.2
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.4e-22 109.4 262 34.4
Duzib114G0319 Durio zibethinus HOM05D003020 ORTHO05D003226 5.7e-22 109.0 251 35.9
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 7.4e-22 108.6 245 34.7
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 7.4e-22 108.6 245 34.7
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.7e-22 108.2 253 34.8
Dinv11798 Davidia involucrata HOM05D003020 ORTHO05D003226 1.3e-21 107.8 277 32.9
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.3e-21 107.8 255 36.1
Actinidia02960 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.2e-21 107.1 230 34.3
CiPaw.01G275700 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.8e-21 106.7 212 41.0
TWI38G1817 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 4.8e-21 105.9 223 36.8
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.4e-20 104.4 266 33.8
Atru.chr12.659 Acer truncatum HOM05D003020 ORTHO05D003226 3.1e-20 103.2 260 35.0
Atru.chr12.686 Acer truncatum HOM05D003020 ORTHO05D003226 3.1e-20 103.2 260 35.0
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 5.3e-20 102.4 269 34.2
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 9.1e-20 101.7 245 33.5
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.1e-20 101.7 269 33.5
Actinidia02963 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.0e-19 100.5 181 34.8
COL.COLO4_23725 Corchorus olitorius HOM05D003020 ORTHO05D003226 2.6e-19 100.1 192 35.4
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 2.6e-19 100.1 250 32.8
Sed0002867 Sechium edule HOM05D003020 ORTHO05D003226 1.0e-18 98.2 246 34.1
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 1.7e-18 97.4 243 32.9
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.9e-18 96.7 253 31.6
DCAR_019134 Daucus carota HOM05D003020 ORTHO05D003226 2.9e-18 96.7 247 32.4
Rhsim09G0153600 Rhododendron simsii HOM05D003020 ORTHO05D003226 2.9e-18 96.7 192 35.4
FAN10G4329 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.0e-18 95.9 187 38.0
Rhsim09G0153800 Rhododendron simsii HOM05D003020 ORTHO05D003226 5.0e-18 95.9 182 35.2
TWI15G1220 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 6.5e-18 95.5 245 32.2
Actinidia07720 Actinidia chinensis HOM05D000283 ORTHO05D003226 8.5e-18 95.1 180 35.6
Rhsim09G0153900 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.1e-17 94.7 230 32.6
Cc02_g11380 Coffea canephora HOM05D003020 ORTHO05D003226 2.5e-17 93.6 262 31.3
Rhsim09G0153700 Rhododendron simsii HOM05D003020 ORTHO05D003226 7.2e-17 92.0 182 36.3
Dinv31353 Davidia involucrata HOM05D003020 ORTHO05D003226 1.2e-16 91.3 228 36.0
Lj1C921T4 Lonicera japonica HOM05D003020 ORTHO05D003226 1.6e-16 90.9 212 33.5
SalBow4G1965 Salvia bowleyana HOM05D003020 ORTHO05D003226 6.1e-16 89.0 252 32.5
ClCG09G020480 Citrullus lanatus HOM05D003020 ORTHO05D003226 8.0e-16 88.6 197 35.5
MELO3C025508.2 Cucumis melo HOM05D003020 ORTHO05D003226 1.0e-15 88.2 251 35.5
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.4e-15 87.8 258 31.4
Lalb_Chr03g0036011 Lupinus albus HOM05D003020 ORTHO05D003226 3.0e-15 86.7 241 34.0
TPR.G16980 Trifolium pratense HOM05D003020 ORTHO05D003226 3.0e-15 86.7 265 32.8
Migut.F01988 Erythranthe guttata HOM05D003020 ORTHO05D003226 3.9e-15 86.3 251 32.7
CsaV3_5G025940 Cucumis sativus L. HOM05D003020 ORTHO05D003226 5.2e-15 85.9 240 35.0
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 1.1e-14 84.7 253 32.0
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 3.3e-14 83.2 246 34.6
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 4.4e-14 82.8 267 31.1
PGR044G1634 Punica granatum HOM05D003020 ORTHO05D003226 4.4e-14 82.8 252 32.5
Glyma.10G213000 Glycine max HOM05D003020 ORTHO05D003226 9.7e-14 81.6 264 30.7
Sabra08G0029800 Salix brachista HOM05D031226 ORTHO05D037394 9.7e-14 81.6 247 34.8
TPR.G1799 Trifolium pratense HOM05D003020 ORTHO05D003226 9.7e-14 81.6 249 32.9
Ca_10586_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 2.8e-13 80.1 249 32.1
Medtr1g095730 Medicago truncatula HOM05D003020 ORTHO05D003226 2.8e-13 80.1 242 31.4
Potri.010G218500 Populus trichocarpa HOM05D031226 ORTHO05D003226 2.8e-13 80.1 299 32.1
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.7e-13 79.7 255 29.0
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.7e-13 79.7 255 29.0
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 3.7e-13 79.7 256 32.8
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 8.2e-13 78.6 247 32.4
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 8.2e-13 78.6 256 28.9
Nitab4.5_0000233g0300 Nicotiana tabacum HOM05D012114 ORTHO05D014153 8.2e-13 78.6 253 28.9
Peaxi162Scf00851g00012 Petunia axillaris HOM05D012114 ORTHO05D014153 8.2e-13 78.6 251 27.1
PGR044G1573 Punica granatum HOM05D003020 ORTHO05D003226 8.2e-13 78.6 242 31.4
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 1.8e-12 77.4 249 30.9
Nitab4.5_0000534g0060 Nicotiana tabacum HOM05D003020 ORTHO05D003226 1.8e-12 77.4 249 30.9
DCAR_015284 Daucus carota HOM05D003020 ORTHO05D003226 2.4e-12 77.0 251 28.3
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 3.1e-12 76.6 253 30.8
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 4.1e-12 76.3 257 31.9
Lj1C921T2 Lonicera japonica HOM05D003020 ORTHO05D003226 4.1e-12 76.3 248 29.4
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 5.3e-12 75.9 254 29.1
Ciclev10033392m.g Citrus clementina HOM05D003020 ORTHO05D003226 5.3e-12 75.9 126 45.2
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 5.3e-12 75.9 254 31.5
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 7.0e-12 75.5 246 32.1
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 7.0e-12 75.5 256 31.2
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.2e-11 74.7 278 30.6
Nitab4.5_0000233g0290 Nicotiana tabacum HOM05D012114 ORTHO05D014153 1.2e-11 74.7 278 28.1
Rhsim09G0153500 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.2e-11 74.7 204 31.9
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 2.6e-11 73.6 255 26.7
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 3.5e-11 73.2 255 29.0
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 3.5e-11 73.2 254 28.7
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 4.5e-11 72.8 277 29.6
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.5e-11 72.8 255 29.0
Glyma.20G178000 Glycine max HOM05D003020 ORTHO05D003226 5.9e-11 72.4 270 31.5
Lsat_1_v5_gn_2_113960 Lactuca sativa HOM05D030802 ORTHO05D003226 5.9e-11 72.4 243 30.9
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 1.0e-10 71.6 247 27.9
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.0e-10 71.6 243 29.2
Lj1C921T3 Lonicera japonica HOM05D003020 ORTHO05D003226 1.3e-10 71.2 210 31.0
Lalb_Chr19g0129551 Lupinus albus HOM05D003020 ORTHO05D003226 1.3e-10 71.2 235 30.2
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 1.3e-10 71.2 265 30.2
Thecc.10G069600 Theobroma cacao HOM05D010162 ORTHO05D010383 1.3e-10 71.2 244 31.6
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 1.7e-10 70.9 254 31.9
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 1.7e-10 70.9 245 30.6
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 1.7e-10 70.9 256 28.5
Sabra10G0169000 Salix brachista HOM05D031226 ORTHO05D037394 1.7e-10 70.9 216 32.9
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.2e-10 70.5 250 30.4
Oeu063752.1 Olea europaea HOM05D003020 ORTHO05D003226 2.2e-10 70.5 229 31.9
Phvul.007G092400 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 2.2e-10 70.5 254 31.5
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 2.9e-10 70.1 236 28.8
Lsat_1_v5_gn_8_19121 Lactuca sativa HOM05D003020 ORTHO05D003226 3.8e-10 69.7 246 29.7
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 5.0e-10 69.3 201 32.8
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 6.5e-10 68.9 202 34.2
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 8.5e-10 68.6 255 29.4
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 8.5e-10 68.6 266 30.5
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 8.5e-10 68.6 274 28.1
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 8.5e-10 68.6 297 26.6
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 1.5e-09 67.8 242 28.9
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 1.9e-09 67.4 291 28.2
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.9e-09 67.4 249 30.9
Psat6g184920 Pisum sativum HOM05D003020 ORTHO05D003226 1.9e-09 67.4 278 29.9
Migut.F01762 Erythranthe guttata HOM05D003020 ORTHO05D003226 2.5e-09 67.0 200 30.0
Lj1P920T18 Lonicera japonica HOM05D003020 ORTHO05D003226 2.5e-09 67.0 181 29.8
Nitab4.5_0000534g0080 Nicotiana tabacum HOM05D012114 ORTHO05D014153 2.5e-09 67.0 252 27.8
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 2.5e-09 67.0 176 31.2
Eucgr.G02809 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.2e-09 66.6 251 28.3
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 3.2e-09 66.6 271 26.9
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 3.2e-09 66.6 187 33.7
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 3.2e-09 66.6 243 29.6
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 4.2e-09 66.2 277 31.8
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 4.2e-09 66.2 255 31.0
Eucgr.J01115 Eucalyptus grandis HOM05D003020 ORTHO05D003226 4.2e-09 66.2 107 43.9
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.5e-09 65.9 266 30.1
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.5e-09 65.9 266 30.1
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 5.5e-09 65.9 244 25.4
Dinv11799 Davidia involucrata HOM05D003020 ORTHO05D003226 5.5e-09 65.9 91 40.7
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 7.2e-09 65.5 198 33.8
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 9.4e-09 65.1 274 26.6
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 9.4e-09 65.1 282 28.7
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 9.4e-09 65.1 205 30.7
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 1.2e-08 64.7 266 27.8
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 1.6e-08 64.3 176 31.8
HanXRQChr08g0219501 Helianthus annuus HOM05D003020 ORTHO05D003226 2.1e-08 63.9 243 27.2
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 2.7e-08 63.5 226 29.6
Nitab4.5_0000534g0070 Nicotiana tabacum HOM05D012114 ORTHO05D014153 2.7e-08 63.5 252 28.2
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 3.6e-08 63.2 239 26.4
Eucgr.J01119 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.0e-07 61.6 272 30.5
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 1.0e-07 61.6 262 26.3
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 1.8e-07 60.8 195 30.8
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 2.3e-07 60.5 258 28.3
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 6.7e-07 58.9 277 27.4
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.2e-06 58.2 255 27.1
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 2.0e-06 57.4 239 28.0
Nitab4.5_0000534g0090 Nicotiana tabacum HOM05D012114 ORTHO05D014153 2.0e-06 57.4 103 35.9
CiPaw.01G275300 Carya illinoinensis HOM05D010935 ORTHO05D010383 2.6e-06 57.0 253 26.9
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.6e-06 57.0 280 24.6
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 2.6e-06 57.0 264 28.8
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 2.6e-06 57.0 190 30.5
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 4.4e-06 56.2 265 26.4
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 4.4e-06 56.2 278 26.6
Actinidia26625 Actinidia chinensis HOM05D003020 ORTHO05D003226 5.7e-06 55.8 70 48.6
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 7.5e-06 55.5 262 25.2
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 7.5e-06 55.5 157 30.6


User provided reference genes

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