Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 1.9e-164 583.9 828 100.0
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.0e-73 281.6 234 63.7
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.6e-73 281.2 234 63.7
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 2.9e-72 277.7 234 63.2
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 3.8e-72 277.3 238 60.5
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 5.4e-71 273.5 241 60.6
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 6.0e-70 270.0 238 59.7
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 7.8e-70 269.6 234 60.7
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 7.8e-70 269.6 241 59.8
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 2.3e-69 268.1 236 59.3
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 1.9e-68 265.0 254 55.9
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.1e-66 259.2 229 61.1
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 4.0e-66 257.3 238 57.6
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 1.3e-64 252.3 245 58.4
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 2.2e-64 251.5 248 55.2
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 3.8e-64 250.8 240 57.1
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.8e-64 250.8 238 57.6
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.8e-64 250.8 240 57.1
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.1e-63 249.2 241 57.3
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 4.2e-63 247.3 244 54.9
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 1.3e-61 242.3 230 55.7
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 3.0e-61 241.1 236 55.5
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 5.1e-61 240.4 233 56.2
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 1.5e-60 238.8 233 54.5
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 3.3e-60 237.7 237 54.4
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 7.3e-60 236.5 237 55.7
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 1.3e-59 235.7 236 56.8
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.1e-59 235.0 237 55.3
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 3.6e-59 234.2 238 55.5
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 1.1e-58 232.6 237 54.0
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.4e-58 232.3 237 54.0
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 1.8e-58 231.9 237 52.7
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 5.3e-58 230.3 228 54.8
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 6.9e-58 229.9 237 54.9
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 4.5e-57 227.3 235 56.6
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 7.6e-57 226.5 238 53.4
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 7.6e-57 226.5 238 53.4
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 7.6e-57 226.5 228 55.7
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 7.6e-57 226.5 213 56.3
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.6e-54 218.8 238 53.8
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.6e-54 218.8 238 53.8
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 2.7e-54 218.0 238 52.5
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 6.0e-54 216.9 238 53.4
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.3e-53 214.9 246 50.8
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 1.9e-52 211.8 227 53.3
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 9.6e-52 209.5 233 50.2
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 6.2e-51 206.8 227 48.9
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 8.1e-51 206.5 231 52.8
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.4e-50 204.9 228 50.0
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 3.1e-50 204.5 232 50.9
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 5.3e-50 203.8 237 50.2
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 2.0e-49 201.8 224 52.7
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 1.7e-48 198.7 232 50.4
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 4.9e-48 197.2 228 48.7
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 8.4e-48 196.4 237 48.9
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.1e-47 196.1 228 48.7
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.4e-47 195.7 228 47.8
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.9e-47 195.3 228 47.8
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 1.9e-47 195.3 246 46.7
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 5.5e-47 193.7 234 50.4
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 2.1e-46 191.8 246 45.9
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.7e-46 191.4 228 45.6
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 1.3e-45 189.1 211 48.3
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 1.1e-44 186.0 242 48.8
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 1.9e-44 185.3 240 45.0
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 1.3e-43 182.6 241 48.1
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.1e-42 177.9 243 46.1
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 2.6e-41 174.9 230 47.0
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 7.6e-41 173.3 232 46.1
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.0e-40 172.9 245 45.3
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 3.8e-40 171.0 237 40.9
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 5.0e-40 170.6 247 45.3
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.1e-39 169.5 140 59.3
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 2.1e-38 165.2 235 46.0
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 6.1e-38 163.7 160 50.0
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 1.0e-37 162.9 174 54.6
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 1.8e-37 162.2 141 56.7
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 4.8e-35 154.1 165 47.9
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 2.6e-33 148.3 249 41.0
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.2e-30 139.4 155 46.5
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 7.9e-30 136.7 155 45.8
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 7.9e-30 136.7 155 45.8
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.0e-29 136.3 176 47.2
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 5.1e-29 134.0 205 44.9
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-28 132.5 245 40.8
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.3e-27 129.4 84 66.7
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.3e-27 129.4 241 39.0
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 2.8e-27 128.3 200 44.0
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 2.4e-26 125.2 246 39.8
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 2.0e-25 122.1 84 67.9
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 5.9e-25 120.6 155 45.2
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 7.7e-25 120.2 92 60.9
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 5.0e-24 117.5 85 63.5
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 5.5e-23 114.0 219 40.2
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.1e-22 112.1 92 60.9
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.7e-22 111.7 111 55.0
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-19 102.8 93 51.6
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-19 102.4 86 55.8
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 2.8e-19 101.7 91 54.9
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 6.3e-19 100.5 94 56.4
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 6.3e-19 100.5 82 58.5
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.0e-17 95.5 68 64.7
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 2.2e-16 92.0 85 52.9
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 5.0e-16 90.9 69 63.8
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 4.7e-14 84.3 239 34.7
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 2.3e-13 82.0 209 32.1
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 3.0e-13 81.6 93 48.4
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.0e-13 81.6 93 48.4
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 3.0e-13 81.6 75 56.0
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 3.0e-13 81.6 75 56.0
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.5e-12 79.3 88 51.1
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.5e-12 79.3 74 52.7
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.5e-12 79.3 74 52.7
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 7.5e-12 77.0 93 46.2
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-11 76.3 96 42.7
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 8.2e-11 73.6 67 52.2
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 1.4e-10 72.8 213 30.5
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.8e-10 72.4 226 31.0
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 5.3e-10 70.9 63 52.4
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 2.0e-09 68.9 92 42.4
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 4.5e-09 67.8 135 29.6
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 5.9e-09 67.4 181 26.0
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-08 65.5 67 53.7
arahy.Tifrunner.gnm1.ann1.DD86YU Arachis hypogaea HOM05D005287 ORTHO05D006893 2.9e-08 65.1 69 52.2
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 2.9e-08 65.1 69 52.2
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.9e-08 65.1 129 35.7
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.8e-08 64.7 129 35.7
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 5.0e-08 64.3 246 29.3
Hma1.2p1_0137F.1_g062540 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 5.0e-08 64.3 67 49.3
Hma1.2p1_0556F.1_g178055 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 5.0e-08 64.3 67 49.3
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 6.5e-08 63.9 69 50.7
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.1e-07 63.2 59 54.2
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 5.5e-07 60.8 107 29.9
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 5.5e-07 60.8 70 40.0
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 7.2e-07 60.5 265 26.0
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 9.4e-07 60.1 199 27.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.2e-06 59.7 105 38.1
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.1e-06 58.9 221 26.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 2.1e-06 58.9 105 38.1
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 2.7e-06 58.5 199 26.6
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 3.6e-06 58.2 229 29.3
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 4.7e-06 57.8 74 43.2
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 8.0e-06 57.0 228 28.5
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 8.0e-06 57.0 209 27.3
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 8.0e-06 57.0 93 31.2
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 8.0e-06 57.0 218 26.1


User provided reference genes

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