Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.0e-110 401.7 191 100.0
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.6e-79 298.5 190 74.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.6e-79 298.5 186 76.3
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 8.1e-79 297.4 184 76.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.1e-79 297.4 186 76.3
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.1e-78 297.0 193 74.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 2.6e-77 292.4 193 70.5
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.3e-76 290.0 193 70.5
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.2e-76 289.3 190 71.1
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 6.4e-76 287.7 193 69.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.4e-75 286.6 193 71.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.9e-75 286.2 193 71.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.2e-75 285.4 193 70.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 4.2e-75 285.0 194 68.0
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 4.2e-75 285.0 192 70.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 9.3e-75 283.9 190 68.9
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-74 283.1 180 71.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.6e-74 283.1 185 73.0
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.1e-74 282.7 189 71.4
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.1e-74 282.7 186 71.5
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.7e-74 282.3 180 71.1
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.7e-74 282.3 184 72.3
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.7e-74 282.3 192 69.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.7e-74 282.3 180 72.2
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.6e-74 281.6 180 73.3
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 7.8e-74 280.8 180 74.4
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 7.8e-74 280.8 193 69.4
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.0e-73 280.4 192 69.3
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.0e-73 278.9 193 68.4
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.0e-73 278.9 180 71.1
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 5.1e-73 278.1 178 72.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 6.6e-73 277.7 179 71.5
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.7e-73 277.3 194 68.6
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.1e-72 276.9 191 67.5
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.9e-72 276.2 185 69.7
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 3.3e-72 275.4 182 69.8
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.3e-72 275.4 180 70.0
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 7.3e-72 274.2 183 68.9
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.3e-71 273.5 193 68.4
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.1e-71 272.7 192 67.7
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-71 272.3 180 69.4
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.8e-71 272.3 168 75.6
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 3.6e-71 271.9 178 71.3
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 3.6e-71 271.9 180 70.0
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 3.6e-71 271.9 181 71.8
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 6.2e-71 271.2 196 67.3
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 8.1e-71 270.8 181 70.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.4e-70 269.2 184 68.5
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 4.0e-70 268.5 196 65.8
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 6.9e-70 267.7 193 68.9
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 6.9e-70 267.7 180 68.3
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 9.0e-70 267.3 182 69.2
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.4e-69 265.4 181 68.5
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.4e-69 265.4 181 68.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 4.5e-69 265.0 191 64.4
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 5.8e-69 264.6 182 68.1
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.8e-69 264.6 182 68.1
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 7.6e-69 264.2 180 67.8
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.7e-68 263.1 180 67.8
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.8e-68 261.9 193 66.8
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 3.8e-68 261.9 176 69.3
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 4.9e-68 261.5 182 68.1
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.9e-68 261.5 182 68.1
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 4.9e-68 261.5 182 67.0
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 8.4e-68 260.8 181 67.4
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.4e-67 260.0 172 73.8
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.9e-67 259.6 172 73.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 3.2e-67 258.8 186 65.6
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 3.2e-67 258.8 186 65.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 3.2e-67 258.8 171 74.3
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.4e-67 258.1 181 65.7
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 7.1e-67 257.7 205 62.4
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 9.3e-67 257.3 180 67.2
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.2e-66 256.9 179 69.3
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.5e-66 255.4 179 67.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 3.5e-66 255.4 180 66.1
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.0e-66 254.6 181 65.2
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 7.9e-66 254.2 182 65.9
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 7.9e-66 254.2 191 64.9
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.9e-66 254.2 181 67.4
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.3e-65 253.4 194 62.4
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.3e-65 252.7 185 64.3
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.3e-65 252.7 194 62.4
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.9e-65 251.9 173 71.1
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.1e-64 250.4 206 58.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.3e-64 248.8 175 66.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 9.6e-64 247.3 180 64.4
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 9.6e-64 247.3 179 62.0
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.3e-63 246.9 193 60.1
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.3e-63 246.9 191 61.8
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.8e-63 245.0 192 60.9
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.4e-62 243.4 180 63.3
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 9.0e-62 240.7 184 63.0
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.5e-61 240.0 165 67.9
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.6e-61 237.7 180 62.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 9.9e-61 237.3 196 59.2
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.7e-60 236.5 178 61.8
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.7e-60 236.5 182 65.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 6.4e-60 234.6 184 59.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 8.4e-60 234.2 190 56.8
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.5e-58 228.8 150 72.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 6.0e-58 228.0 174 62.6
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 6.0e-58 228.0 186 58.1
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 6.0e-58 228.0 159 65.4
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.0e-57 227.3 161 68.3
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 2.3e-57 226.1 187 58.3
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 6.7e-57 224.6 162 66.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 8.7e-57 224.2 160 66.9
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.6e-53 212.6 136 72.8
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 8.4e-52 207.6 172 61.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 7.1e-51 204.5 133 72.9
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 7.1e-51 204.5 183 53.0
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 4.6e-50 201.8 133 72.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.9e-48 196.4 195 50.3
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.8e-47 192.6 133 64.7
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-45 186.8 167 54.5
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-45 186.0 169 53.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-44 182.6 169 53.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-42 176.0 153 56.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.3e-41 173.7 112 70.5
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-41 172.2 162 51.9
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.2e-39 166.4 185 47.0
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.7e-39 165.6 120 66.7
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.1e-38 161.0 137 56.2
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.9e-36 156.0 180 47.8
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.4e-35 153.7 189 42.9
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.9e-35 153.3 178 46.1
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.5e-35 152.9 108 66.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 5.5e-35 151.8 95 71.6
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.1e-34 149.8 168 45.8
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-34 149.4 126 57.9
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.4e-27 127.1 189 40.2
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.9e-26 121.3 87 62.1
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-20 102.8 98 50.0
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.4e-19 97.8 117 45.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.2e-13 80.9 57 71.9
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.1e-11 74.3 51 64.7
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.6e-10 70.5 43 72.1
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 8.0e-10 68.2 100 42.0
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 8.0e-10 68.2 43 67.4
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-09 66.6 53 56.6
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.8e-09 64.7 44 65.9
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 4.1e-06 55.8 52 53.8


User provided reference genes

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