Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G042000 Manihot esculenta HOM05D007202 ORTHO05D009125 3.2e-225 785.8 483 100.0
Potri.005G090600 Populus trichocarpa HOM05D007202 ORTHO05D009125 2.0e-118 431.0 477 63.7
Prupe.7G271800 Prunus persica HOM05D007202 ORTHO05D009125 3.2e-116 423.7 497 61.8
Sabra05G0074700 Salix brachista HOM05D007202 ORTHO05D009125 3.2e-116 423.7 467 63.6
Dinv07882 Davidia involucrata HOM05D007202 ORTHO05D009125 3.6e-115 420.2 498 63.3
GSVIVG01026178001 Vitis vinifera HOM05D007202 ORTHO05D009125 8.0e-115 419.1 502 61.2
Haze_11774 Corylus avellana HOM05D007202 ORTHO05D009125 6.7e-114 416.0 497 60.0
QL12p025863 Quercus lobata HOM05D007202 ORTHO05D009125 7.5e-113 412.5 440 65.2
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 2.2e-112 411.0 505 62.8
Atru.chr11.1126 Acer truncatum HOM05D007202 ORTHO05D009125 4.8e-112 409.8 474 64.1
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 1.8e-111 407.9 498 59.8
Duzib132G0783 Durio zibethinus HOM05D007202 ORTHO05D009125 2.4e-111 407.5 503 62.8
Ciclev10030697m.g Citrus clementina HOM05D007202 ORTHO05D009125 1.1e-108 398.7 474 61.4
Eucgr.J00877 Eucalyptus grandis HOM05D007202 ORTHO05D009125 9.4e-108 395.6 456 58.8
Thecc.02G157500 Theobroma cacao HOM05D007202 ORTHO05D009125 2.1e-107 394.4 498 62.9
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 2.6e-105 387.5 466 60.1
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 3.4e-105 387.1 505 57.6
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 3.7e-104 383.6 505 55.6
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 8.3e-104 382.5 447 47.0
TWI53G0827 Tripterygium wilfordii HOM05D007202 ORTHO05D009125 2.4e-103 380.9 475 55.2
ClCG01G011340 Citrullus lanatus HOM05D007202 ORTHO05D009125 9.1e-103 379.0 452 58.0
CsaV3_5G014410 Cucumis sativus L. HOM05D007202 ORTHO05D009125 4.5e-102 376.7 454 61.2
RcHm_v2.0_Chr4g0408911 Rosa chinensis HOM05D007202 ORTHO05D009125 8.6e-101 372.5 497 57.3
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 7.2e-100 369.4 450 60.9
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 1.6e-99 368.2 450 60.9
FAN12G2678 Fragaria x ananassa HOM05D007202 ORTHO05D009125 2.8e-99 367.5 494 56.9
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 4.7e-99 366.7 448 45.1
FAN12G3533 Fragaria x ananassa HOM05D007202 ORTHO05D009125 6.1e-99 366.3 494 56.9
FvH4_4g11723 Fragaria vesca HOM05D007202 ORTHO05D009125 1.0e-98 365.5 494 56.5
Cc07_g16390 Coffea canephora HOM05D007202 ORTHO05D009125 6.8e-98 362.8 475 58.3
AT5G08310 Arabidopsis thaliana HOM05D007202 ORTHO05D009125 2.0e-97 361.3 491 55.2
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 2.6e-97 360.9 446 62.1
Sp6g34640 Schrenkiella parvula HOM05D007202 ORTHO05D009125 4.4e-97 360.1 485 56.1
AL6G18720 Arabidopsis lyrata HOM05D007202 ORTHO05D009125 1.3e-96 358.6 488 55.9
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 6.3e-96 356.3 447 58.6
THA.LOC104800801 Tarenaya hassleriana HOM05D007202 ORTHO05D009125 8.3e-96 355.9 467 55.7
CARHR204810 Cardamine hirsuta HOM05D007202 ORTHO05D009125 1.6e-94 351.7 440 56.6
Sed0015759 Sechium edule HOM05D007202 ORTHO05D009125 2.7e-94 350.9 459 58.0
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 4.5e-94 350.1 471 55.2
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 4.5e-94 350.1 501 55.1
Aa31LG3G18260 Aethionema arabicum HOM05D007202 ORTHO05D009766 5.0e-93 346.7 483 54.7
Hund26048 Selenicereus undatus HOM05D007202 ORTHO05D009125 1.5e-92 345.1 454 57.7
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 1.9e-92 344.7 471 54.4
CANSAT54G1393 Cannabis sativa HOM05D007202 ORTHO05D009125 2.5e-92 344.4 475 56.2
Carub.0006s0720 Capsella rubella HOM05D007202 ORTHO05D009125 7.3e-92 342.8 435 57.7
BolC9t59607H Brassica oleracea HOM05D007202 ORTHO05D009125 2.8e-91 340.9 440 58.2
Thhalv10015588m.g Eutrema salsugineum HOM05D007202 ORTHO05D009125 8.0e-91 339.3 477 54.3
Aqoxy6G00861 Aquilegia oxysepala HOM05D007202 ORTHO05D009125 2.0e-89 334.7 460 58.3
A10p28370 Brassica napus HOM05D007202 ORTHO05D009125 2.0e-89 334.7 438 59.6
C09p68630 Brassica napus HOM05D007202 ORTHO05D009125 2.6e-89 334.3 441 60.3
Migut.I00254 Erythranthe guttata HOM05D007202 ORTHO05D009125 3.4e-89 334.0 433 51.0
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 7.5e-89 332.8 460 54.8
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 2.2e-88 331.3 433 54.3
Ah.03g147890 Amaranthus hybridus HOM05D007202 ORTHO05D009125 8.3e-88 329.3 463 56.6
BraA10t44884Z Brassica rapa HOM05D007202 ORTHO05D009125 1.4e-87 328.6 439 55.6
PGR142G1500 Punica granatum HOM05D007202 ORTHO05D009125 7.0e-87 326.2 457 51.2
EL10Ac9g22973 Beta vulgaris HOM05D007202 ORTHO05D009125 2.3e-85 321.2 441 55.3
Hma1.2p1_2428F.1_g321970 Hydrangea macrophylla HOM05D007202 ORTHO05D009125 3.0e-85 320.9 449 56.1
Phvul.007G015700 Phaseolus vulgaris HOM05D007202 ORTHO05D009125 3.0e-85 320.9 434 55.8
Glyma.20G104200 Glycine max HOM05D007202 ORTHO05D009125 7.3e-84 316.2 457 53.8
Lj5g0012863 Lotus japonicus HOM05D007202 ORTHO05D009125 2.1e-83 314.7 422 57.3
PSO063G1738 Papaver somniferum HOM05D007202 ORTHO05D009125 1.8e-82 311.6 473 56.2
Lalb_Chr02g0143591 Lupinus albus HOM05D007202 ORTHO05D009125 4.0e-82 310.5 427 57.6
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 1.2e-81 308.9 471 54.8
Rhsim09G0070400 Rhododendron simsii HOM05D007202 ORTHO05D009125 2.0e-81 308.1 253 60.1
SalBow5G0881 Salvia bowleyana HOM05D007202 ORTHO05D009125 2.6e-81 307.8 431 48.5
VMungo0720G1420 Vigna mungo HOM05D007202 ORTHO05D009125 9.8e-81 305.8 434 54.6
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 1.7e-80 305.1 447 53.2
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 3.7e-80 303.9 443 58.7
Solyc04g009220.2 Solanum lycopersicum HOM05D007202 ORTHO05D009125 3.7e-80 303.9 441 53.1
SGA_v2.0_scaffold102G29846 Striga asiatica HOM05D007202 ORTHO05D009125 8.3e-80 302.8 431 49.0
Sopen04g004350 Solanum pennellii HOM05D007202 ORTHO05D009125 1.9e-79 301.6 473 48.8
HanXRQChr13g0392131 Helianthus annuus HOM05D007202 ORTHO05D009125 2.4e-79 301.2 452 55.5
PGSC0003DMG400032545 Solanum tuberosum HOM05D007202 ORTHO05D009125 7.0e-79 299.7 432 53.9
CAN.G619.3 Capsicum annuum HOM05D007202 ORTHO05D009125 7.3e-76 289.7 459 50.1
Oeu037581.1 Olea europaea HOM05D007202 ORTHO05D009125 8.1e-75 286.2 394 51.8
Medtr1g114190 Medicago truncatula HOM05D000730 ORTHO05D009125 6.6e-69 266.5 424 42.9
Ca_11225_v3 Cicer arietinum L. HOM05D007202 ORTHO05D009125 1.1e-68 265.8 437 41.2
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 1.5e-68 265.4 429 37.8
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 1.2e-67 262.3 431 42.5
HPP92_022482 Vanilla planifolia HOM05D007202 ORTHO05D009125 4.7e-67 260.4 447 52.6
FAN07G0522 Fragaria x ananassa HOM05D007202 ORTHO05D009125 1.8e-66 258.5 354 61.6
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.4e-66 258.1 449 53.2
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 4.0e-66 257.3 452 55.8
MSTRG.22930 Avicennia marina HOM05D007202 ORTHO05D009125 6.4e-64 250.0 415 46.3
ECA233G0992 Erigeron canadensis HOM05D000200 ORTHO05D001546 7.8e-62 243.0 420 52.4
Nitab4.5_0006691g0020 Nicotiana tabacum HOM05D007202 ORTHO05D009125 3.0e-61 241.1 369 54.7
FvH4_4g11722 Fragaria vesca HOM05D007202 ORTHO05D009125 9.6e-60 236.1 339 60.8
SalBow5G3041 Salvia bowleyana HOM05D007202 ORTHO05D009125 2.0e-57 228.4 368 46.5
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 1.6e-54 218.8 441 48.5
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 2.1e-54 218.4 453 49.9
ATR0712G074 Amborella trichopoda HOM05D007202 ORTHO05D009125 7.8e-54 216.5 451 32.4
Peaxi162Scf00681g00018 Petunia axillaris HOM05D007202 ORTHO05D009125 2.8e-51 208.0 380 54.5
ClCG01G011360 Citrullus lanatus HOM05D007202 ORTHO05D009125 9.3e-47 193.0 157 58.6
Nitab4.5_0009973g0040 Nicotiana tabacum HOM05D007202 ORTHO05D009125 6.0e-46 190.3 310 56.8
BcaC03g13219 Brassica carinata HOM05D007202 ORTHO05D009125 4.5e-41 174.1 155 59.4
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 9.9e-41 172.9 163 53.4
unitig_26.g9680 Utricularia gibba HOM05D007202 ORTHO05D009125 8.4e-32 143.3 130 55.4
Zm00001eb009120 Zea mays HOM05D007202 ORTHO05D009125 3.7e-27 127.9 441 44.0
CAN.G298.25 Capsicum annuum HOM05D007202 ORTHO05D009125 7.4e-20 103.6 321 39.6
CsaV3_5G014430 Cucumis sativus L. HOM05D007202 ORTHO05D009125 1.1e-18 99.8 97 51.5
COL.COLO4_33057 Corchorus olitorius HOM05D007202 ORTHO05D009125 3.2e-15 88.2 109 45.9
QL03p045855 Quercus lobata HOM05D007202 ORTHO05D009125 6.3e-11 73.9 119 37.8
Ca_27130_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 1.8e-10 72.4 185 29.7
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 3.1e-10 71.6 214 24.3
Lalb_Chr13g0290421 Lupinus albus HOM05D000424 ORTHO05D000355 4.1e-10 71.2 185 29.2
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 5.3e-10 70.9 198 26.8
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 1.5e-09 69.3 193 24.9
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 1.5e-09 69.3 217 26.3
Dinv07880 Davidia involucrata HOM05D007202 ORTHO05D009125 5.9e-09 67.4 110 34.5
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 7.7e-09 67.0 216 26.4
Lj6g0020430 Lotus japonicus HOM05D000424 ORTHO05D000355 1.3e-08 66.2 185 27.6
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.7e-08 65.9 200 26.5
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.7e-08 65.9 201 26.4
Nitab4.5_0010740g0020 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.7e-08 65.9 161 30.4
TAR381G0265 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.7e-08 65.9 175 28.6
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 2.9e-08 65.1 175 29.7
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 2.9e-08 65.1 229 24.0
Actinidia01390 Actinidia chinensis HOM05D000424 ORTHO05D000355 3.8e-08 64.7 237 26.2
Nitab4.5_0000020g0300 Nicotiana tabacum HOM05D000424 ORTHO05D000355 3.8e-08 64.7 161 30.4
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 5.0e-08 64.3 174 29.3
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 5.0e-08 64.3 186 28.0
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 5.0e-08 64.3 124 34.7
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 8.5e-08 63.5 186 28.0
CsaV3_5G014140 Cucumis sativus L. HOM05D000424 ORTHO05D000355 8.5e-08 63.5 161 29.8
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.1e-07 63.2 174 29.3
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 1.1e-07 63.2 215 26.5
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 1.1e-07 63.2 180 27.2
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 1.1e-07 63.2 161 29.2
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 1.4e-07 62.8 198 26.8
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 1.4e-07 62.8 161 29.2
MELO3C026690.2 Cucumis melo HOM05D000424 ORTHO05D000355 1.4e-07 62.8 161 29.8
AUR62004038 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.9e-07 62.4 175 28.6
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 2.5e-07 62.0 175 29.1
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 2.5e-07 62.0 217 27.2
PSO063G3107 Papaver somniferum HOM05D007145 ORTHO05D008952 2.5e-07 62.0 302 23.2
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.2e-07 61.6 231 24.2
Ciclev10031787m.g Citrus clementina HOM05D007486 ORTHO05D003673 3.2e-07 61.6 184 26.1
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 3.2e-07 61.6 175 28.6
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 3.2e-07 61.6 231 24.7
CSS0011638 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 4.2e-07 61.2 175 28.6
Cfa006779 Carpinus fangiana HOM05D000424 ORTHO05D000355 4.2e-07 61.2 175 28.0
AUR62007548 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.2e-07 61.2 175 28.6
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 4.2e-07 61.2 225 23.1
Mapoly0001s0500 Marchantia polymorpha HOM05D043813 ORTHO05D009264 4.2e-07 61.2 265 20.8
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.2e-07 61.2 120 29.2
Prupe.7G001100 Prunus persica HOM05D000424 ORTHO05D000355 4.2e-07 61.2 217 26.3
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 4.2e-07 61.2 179 27.9
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 5.5e-07 60.8 186 26.3
CSS0044152 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 5.5e-07 60.8 161 28.6
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 5.5e-07 60.8 195 26.7
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 5.5e-07 60.8 225 23.6
AagrBONN_evm.TU.Sc2ySwM_344.4626__4627 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.2e-07 60.5 135 26.7
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 7.2e-07 60.5 123 31.7
CDE02G3157 Ceratophyllum demersum HOM05D007145 ORTHO05D008952 7.2e-07 60.5 260 22.3
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 9.4e-07 60.1 201 27.9
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 9.4e-07 60.1 245 21.6
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.2e-06 59.7 161 28.0
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.2e-06 59.7 167 28.1
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 1.2e-06 59.7 220 25.9
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 1.2e-06 59.7 217 23.5
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 1.2e-06 59.7 204 24.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 1.6e-06 59.3 231 24.7
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.6e-06 59.3 214 25.7
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.6e-06 59.3 214 25.7
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 1.6e-06 59.3 177 28.8
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.6e-06 59.3 185 27.0
SHI12026 Sapria himalayana HOM05D000424 ORTHO05D000355 1.6e-06 59.3 186 26.3
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 1.6e-06 59.3 161 28.6
AUR62043158 Chenopodium quinoa HOM05D007145 ORTHO05D008952 2.1e-06 58.9 252 23.8
QL08p038611 Quercus lobata HOM05D000424 ORTHO05D000355 2.1e-06 58.9 161 28.0
SMO361G0319 Selaginella moellendorffii HOM05D005362 ORTHO05D010796 2.1e-06 58.9 187 23.5
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 2.7e-06 58.5 215 25.6
ATR0315G083 Amborella trichopoda HOM05D006749 ORTHO05D008352 2.7e-06 58.5 138 29.0
GSVIVG01008474001 Vitis vinifera HOM05D006174 ORTHO05D007987 2.7e-06 58.5 194 24.2
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.6e-06 58.2 195 23.6
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.6e-06 58.2 195 23.6
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 4.7e-06 57.8 227 24.7
ATR0049G008 Amborella trichopoda HOM05D002244 ORTHO05D002269 4.7e-06 57.8 125 31.2
AUR62000973 Chenopodium quinoa HOM05D007128 ORTHO05D009059 4.7e-06 57.8 258 22.9
Mapoly0015s0193 Marchantia polymorpha HOM05D004079 ORTHO05D023551 6.1e-06 57.4 97 36.1
QL02p049542 Quercus lobata HOM05D000424 ORTHO05D000355 6.1e-06 57.4 161 27.3
ATR0743G184 Amborella trichopoda HOM05D007128 ORTHO05D009059 8.0e-06 57.0 221 26.7
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 8.0e-06 57.0 129 29.5
Nitab4.5_0000085g0340 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.0e-06 57.0 161 26.7
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 8.0e-06 57.0 249 24.9


User provided reference genes

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