Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 5.8e-211 737.3 361 100.0
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.8e-148 529.6 393 71.0
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.5e-145 520.0 383 70.2
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 8.8e-143 510.8 389 68.4
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 3.3e-142 508.8 357 71.7
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.8e-141 505.8 381 69.0
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.1e-140 502.3 389 68.6
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.6e-139 500.0 389 66.8
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.5e-137 492.7 374 67.4
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 4.2e-137 491.9 397 66.2
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 5.5e-137 491.5 395 64.3
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.6e-136 490.0 388 66.8
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 8.0e-136 487.6 386 66.3
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.0e-135 487.3 378 66.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 7.5e-134 481.1 412 63.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 3.7e-133 478.8 380 63.9
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 4.8e-133 478.4 389 64.0
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.4e-132 476.1 389 63.8
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 9.1e-132 474.2 344 68.3
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 5.9e-131 471.5 385 63.9
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 7.7e-131 471.1 344 68.0
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 9.4e-129 464.2 388 61.9
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 6.8e-127 458.0 366 64.8
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.3e-125 453.8 379 62.5
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-123 447.2 403 57.8
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.7e-123 446.0 389 59.9
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 2.7e-123 446.0 379 62.3
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 4.7e-120 435.3 347 64.8
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.0e-119 432.6 316 69.6
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 5.2e-119 431.8 348 64.1
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 8.9e-119 431.0 371 60.6
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.2e-118 430.6 347 62.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.0e-118 429.9 379 59.4
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 4.4e-118 428.7 383 59.3
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 5.7e-118 428.3 371 59.0
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.3e-117 427.2 369 60.2
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.3e-117 427.2 382 58.4
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.7e-117 426.8 344 61.9
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.2e-117 426.4 381 58.3
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-117 426.0 384 57.6
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 4.9e-117 425.2 370 59.2
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 6.4e-117 424.9 380 57.1
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 8.3e-117 424.5 372 57.3
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 8.3e-117 424.5 367 58.9
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.4e-116 423.7 346 61.6
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 2.4e-116 422.9 385 57.7
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 4.1e-116 422.2 349 62.8
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 9.2e-116 421.0 372 57.0
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.2e-115 420.6 364 59.1
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.0e-115 419.9 328 64.0
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 2.0e-115 419.9 371 62.0
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 3.5e-115 419.1 378 56.6
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 4.6e-115 418.7 369 56.9
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 5.9e-115 418.3 365 58.6
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.9e-115 418.3 378 56.6
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.0e-114 417.5 365 57.3
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 2.3e-114 416.4 387 56.1
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 3.0e-114 416.0 386 55.4
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.0e-114 416.0 393 56.0
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 3.0e-114 416.0 398 57.0
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.9e-114 415.6 376 56.6
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 5.0e-114 415.2 372 56.2
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 6.6e-114 414.8 380 56.8
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 8.6e-114 414.5 347 61.1
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.5e-113 413.7 362 56.9
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.5e-113 413.7 376 55.9
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.5e-113 413.7 373 56.8
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.5e-113 412.9 378 55.8
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.5e-113 412.9 378 55.8
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 3.3e-113 412.5 348 59.8
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 4.3e-113 412.1 346 59.5
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.3e-113 412.1 345 60.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 5.6e-113 411.8 361 57.3
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.3e-113 411.4 376 56.9
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 9.5e-113 411.0 381 58.0
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.2e-112 410.6 378 55.6
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.6e-112 410.2 372 56.7
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.6e-112 410.2 392 53.8
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.6e-112 410.2 346 59.5
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.7e-112 408.7 380 55.3
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 6.2e-112 408.3 346 59.0
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.0e-111 407.5 377 56.5
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.0e-111 407.5 374 55.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.8e-111 406.8 346 57.2
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.8e-111 406.8 443 50.8
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 2.3e-111 406.4 380 55.0
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.3e-111 406.4 403 54.6
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 3.1e-111 406.0 362 56.9
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 3.1e-111 406.0 346 58.4
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 5.2e-111 405.2 367 56.7
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 5.2e-111 405.2 369 55.8
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 1.2e-110 404.1 367 55.9
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 2.0e-110 403.3 365 57.3
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.4e-110 402.5 372 55.9
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 9.8e-110 401.0 368 54.9
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.3e-109 400.6 550 44.5
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.9e-109 399.4 367 55.9
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.9e-109 399.4 347 56.5
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 2.9e-109 399.4 344 57.0
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 4.9e-109 398.7 350 58.6
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.4e-109 398.3 360 60.6
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 8.3e-109 397.9 344 56.1
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.3e-106 389.8 369 57.5
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.3e-106 389.8 391 52.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 8.6e-106 387.9 332 59.0
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.9e-105 386.7 353 54.7
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 2.5e-105 386.3 381 53.0
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 5.6e-105 385.2 376 53.5
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.1e-104 381.3 524 44.1
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 4.0e-103 379.0 371 54.2
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 8.3e-101 371.3 381 51.4
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 9.2e-100 367.9 339 55.5
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 3.9e-98 362.5 365 58.1
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.7e-96 355.5 275 66.2
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 8.1e-96 354.8 351 51.0
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.1e-95 354.4 415 47.2
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-95 354.4 401 48.4
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.4e-95 354.0 378 52.6
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 6.8e-95 351.7 310 58.4
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.7e-91 339.7 345 52.2
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.3e-89 332.8 323 53.6
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 6.2e-88 328.6 370 48.9
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.3e-85 320.9 274 60.6
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 4.9e-85 318.9 308 54.2
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 4.6e-83 312.4 407 44.7
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 6.2e-80 302.0 262 60.7
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 6.2e-80 302.0 373 49.9
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.3e-79 298.9 404 44.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 4.9e-77 292.4 354 44.6
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 5.6e-73 278.9 392 40.6
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 6.9e-71 271.9 279 51.6
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.5e-70 270.8 253 55.3
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.0e-70 270.4 263 54.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 9.9e-70 268.1 352 42.0
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 2.2e-69 266.9 345 48.4
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.2e-68 262.7 287 53.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.3e-64 251.1 232 57.3
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 4.0e-63 246.1 502 36.5
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 5.5e-60 235.7 248 51.6
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 8.7e-58 228.4 241 48.5
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.0e-53 214.9 189 59.3
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.5e-52 209.1 364 39.6
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.3e-50 203.8 193 57.0
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.8e-42 177.6 114 74.6
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 3.3e-41 173.3 291 36.8
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.4e-31 140.6 386 28.8
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 3.1e-31 140.2 197 37.6
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.9e-28 131.0 119 52.9
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.2e-27 128.3 339 27.1
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.3e-26 124.0 142 50.7
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.7e-24 117.9 314 27.4
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.4e-23 114.8 96 57.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.0e-18 98.6 83 56.6
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.8e-16 90.5 63 60.3
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 2.7e-14 84.0 44 81.8
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.1e-11 74.3 42 78.6


User provided reference genes

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