Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 0.0e+00 2632.1 1369 100.0
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 0.0e+00 1913.3 1381 75.2
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.8e-290 1002.7 1345 48.6
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 9.3e-286 987.6 1330 48.9
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.5e-278 961.8 1362 47.1
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 4.8e-266 922.2 1327 45.7
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.4e-265 920.6 1330 46.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.4e-257 894.0 1337 46.7
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 4.4e-243 845.9 1297 44.6
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.8e-241 840.5 1475 41.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.5e-238 830.1 1238 45.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.2e-235 821.2 1238 45.2
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.8e-234 816.6 1385 42.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 9.1e-233 811.6 1314 43.2
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 5.9e-232 808.9 1507 41.4
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.5e-230 804.3 1317 43.7
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.0e-227 793.9 1341 43.5
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.9e-226 789.3 1341 43.5
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 9.2e-225 785.0 1301 42.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.2e-221 774.6 1300 42.2
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.1e-220 770.0 1335 41.0
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.9e-218 762.7 1219 43.9
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 4.1e-201 706.4 1348 41.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 5.4e-201 706.1 1495 37.7
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 1.1e-196 691.8 1523 37.2
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.1e-196 691.8 1339 40.2
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 3.4e-195 686.8 1523 37.2
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 5.8e-195 686.0 1500 37.9
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 7.3e-190 669.1 1514 36.7
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.8e-186 656.8 1508 37.7
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.0e-183 647.1 1346 40.6
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.1e-177 628.6 1507 37.0
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.9e-177 627.9 1293 41.0
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.9e-175 620.2 1523 37.3
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 6.7e-175 619.4 1305 40.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.3e-173 615.1 1508 37.1
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 6.9e-172 609.4 1514 37.1
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.5e-169 600.9 1336 39.0
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 3.2e-169 600.5 1336 38.7
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.1e-167 593.2 1337 38.6
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.1e-167 593.2 1335 38.4
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.6e-163 580.9 1377 37.4
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.4e-163 580.5 1336 38.5
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.5e-155 555.1 1380 35.2
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 3.2e-153 547.4 942 44.7
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 9.4e-153 545.8 1243 37.4
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 9.4e-153 545.8 1158 38.9
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.6e-152 543.5 1277 35.9
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.2e-145 520.8 1370 35.3
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.7e-141 508.4 1281 36.5
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 5.2e-127 460.3 1096 37.6
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 2.0e-126 458.4 1255 33.9
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.2e-125 454.9 1296 33.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.3e-122 445.7 1337 33.1
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.5e-121 441.4 1373 32.6
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.7e-120 438.0 1321 33.2
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 3.6e-120 437.6 1352 32.1
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.0e-119 434.5 1334 33.5
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 5.7e-118 430.3 1288 32.5
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.3e-117 429.1 1325 32.6
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.3e-114 418.3 1280 32.7
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 3.0e-111 407.9 553 48.1
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.6e-104 384.4 1303 32.7
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 1.1e-100 372.9 1301 30.5
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.2e-100 369.8 1314 30.7
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.4e-95 355.9 1473 29.9
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.5e-94 352.4 807 35.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.4e-92 345.1 291 61.9
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.4e-84 318.5 821 34.7
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.9e-81 308.9 809 35.6
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 3.3e-81 308.1 1416 29.7
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.8e-79 302.4 804 34.3
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 6.9e-79 300.4 883 34.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 8.4e-77 293.5 1151 29.6
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-74 286.2 1046 29.9
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 3.1e-71 275.0 651 34.7
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 5.3e-71 274.2 660 35.5
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 5.8e-70 270.8 786 34.2
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.9e-68 265.8 827 32.5
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.8e-66 259.2 758 33.5
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.9e-65 255.8 699 33.3
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 4.8e-64 251.1 1332 28.1
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.8e-63 249.2 672 33.3
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 3.3e-57 228.4 1206 28.3
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.8e-53 214.9 840 30.4
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 8.4e-53 213.8 1093 27.4
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 7.9e-51 207.2 1303 26.1
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.0e-50 206.8 1066 27.2
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 3.9e-50 204.9 1252 26.2
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.8e-48 198.7 357 38.9
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 5.3e-47 194.5 1150 27.6
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 2.6e-46 192.2 1310 27.1
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.2e-45 189.1 1305 26.4
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 6.1e-43 181.0 1340 25.1
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.8e-42 179.5 1226 26.5
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 8.7e-42 177.2 698 30.8
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 8.2e-40 170.6 1027 26.0
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-39 170.2 299 38.5
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 1.3e-37 163.3 1275 26.0
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 5.5e-36 157.9 1226 25.4
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.7e-35 155.6 1432 24.8
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.4e-34 153.3 1240 25.2
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 5.1e-34 151.4 1011 25.4
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-33 149.8 435 33.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 9.1e-31 140.6 349 34.7
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 1.9e-28 132.9 1253 25.1
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.6e-27 128.6 1258 24.9
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.3e-26 125.9 533 28.7
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 6.7e-26 124.4 1247 24.4
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.6e-25 122.5 483 30.6
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-22 113.2 388 30.9
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.6e-22 112.5 1322 23.9
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.1e-20 107.1 821 26.4
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 6.1e-19 101.3 404 30.2
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.3e-18 99.4 396 30.3
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 2.6e-17 95.9 1244 24.9
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.6e-17 95.9 419 30.5
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 3.3e-17 95.5 138 42.8
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 8.2e-16 90.9 1242 24.0
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-14 84.7 416 27.6
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.5e-13 80.9 215 34.0
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.2e-12 79.0 319 28.8
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.2e-11 77.0 274 31.8
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.7e-11 75.9 1503 22.8
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.7e-11 75.9 125 41.6
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 8.8e-10 70.9 252 31.3
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 9.8e-09 67.4 46 73.9
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 2.8e-08 65.9 121 32.2
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 3.7e-08 65.5 170 30.6
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.7e-08 65.5 851 25.3
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.4e-07 63.5 43 72.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.4e-07 63.5 43 72.1
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-07 63.5 413 27.4
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 9.1e-07 60.8 124 33.1
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 9.1e-07 60.8 200 27.5
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 2.0e-06 59.7 413 24.7
BcaC04g19101 Brassica carinata HOM05D010678 ORTHO05D006673 5.9e-06 58.2 100 44.0
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.9e-06 58.2 89 38.2


User provided reference genes

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